HiDiH - Hub for Innovations in Digital Health

A python tool to investigate cell overlaps in imaging-based spatial transcriptomics data.

Implementation of multiplex Leiden for analysis of spatial omics data

Implementation of MULTISPATI-PCA in Python

Segmentation-free Analysis of In Situ Capture data

Domain detection from labeled grids

A snakemake pipeline for aligning UMI based WGS data and QC metrics associated with it

Unsupervised coloring of 3D and 2D embeddings of high-dimensional datasets with different color spaces.