Infectious Disease Dynamics Group at Johns Hopkins University

Popular repositories Loading

1. COVIDScenarioPipeline COVIDScenarioPipelinePublic archive

   Public shared code for doing scenario forecasting and creating reports for various governmental entities.

   HTML 104 48

2. ncov_incubation ncov_incubationPublic

   Estimating the incubation time of the novel coronavirus (nCoV-2019) based on traveler data using coarse data tools

   56 20

3. covidRTPCR covidRTPCRPublic

   Analysis of RT-PCR sensitivity by day since exposure or symptom onset

   Stan 25 11

4. hit-covid hit-covidPublic

   Data and Codebook for the HIT-COVID Project

   22 7

5. nCoV-Sandbox nCoV-SandboxPublic

   HTML 15 4

6. phylosamp phylosampPublic

   The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.

   R 14 3