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IGDRion

Long read sequencing @ IGDR (UMR6290 - CNRS - UR1 - INSERM)

10 followers
France
https://igdr.univ-rennes.fr/igdrion
igdrion.lr@gmail.com

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IGDRion Long Read (LR) sequencing with Nanopore Repo 👋

Presenting the repositories for tools used/developed by the Long Read sequencing facility @ IGDR.

For informations about specific projects (sequencing data, primary analysis, seccondary analysis...), see the dedicated privateGitLab webpage.

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ANNEXAANNEXAPublic
Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
R 17 2
TransforKmersTransforKmersPublic
Jupyter Notebook 2

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Showing 8 of 8 repositories

ANNEXA Public
Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).
IGDRion/ANNEXA's past year of commit activity
R 17MIT 2 1 0 Updated Mar 13, 2026
scans Public
SCANS pipeline to identify orthologous lncRNAs between species using synteny and sequence alignment analysis.
IGDRion/scans's past year of commit activity
R 1GPL-3.0 0 1 0 Updated Sep 30, 2025
.github Public
IGDR Long Read (LR) github organization
IGDRion/.github's past year of commit activity
0 0 0 0 Updated Apr 5, 2025
Resist_Portal Public
IGDRion/Resist_Portal's past year of commit activity
R 1MIT 0 0 0 Updated Jan 7, 2025
EnrichRadar Public
DESeq2 output viewer + make interactive filters
IGDRion/EnrichRadar's past year of commit activity
R 2 0 0 0 Updated Jul 10, 2024
TransforKmers Public
IGDRion/TransforKmers's past year of commit activity
Jupyter Notebook 2 0 0 0 Updated Apr 29, 2024
ANNEXseq Public
Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data
IGDRion/ANNEXseq's past year of commit activity
Nextflow 2MIT 0 2 0 Updated Nov 15, 2023
BamType Public
Quality control of newly discovered transcript annotation
IGDRion/BamType's past year of commit activity
HTML 2MIT 0 0 0 Updated Jun 30, 2023

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