JEFworks Lab

Pinned Loading

1. STdeconvolveSTdeconvolvePublic

   Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data

   R 160 20

2. STalignSTalignPublic

   Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

   HTML 104 26

3. CRAWDADCRAWDADPublic

   Cell-type Relationship Analysis Workflow Done Across Distances

   R 42 7

4. SErasterSErasterPublic

   Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis

   R 19 5

5. STcompareSTcomparePublic

   STcompare is an R package for comparing spatial gene expression patterns across spatial transcriptomics (ST) datasets

   R 9 1

6. STARITSTARITPublic

   Spatial Transcriptomics As Rasterized Tensors (STARIT)

   Jupyter Notebook 1