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RefChef

TravisCoverageDocsLicensePyPi

RefChef is a reference management tool used to (1) document the exact steps undertaken in the retrieval of genomic references, (2) maintain the associated metadata, (3) provide a mechanism for automatically reproducing retrieval and creation of an exact copy of genomic references.

Installation

To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef

Development

To install a development version from the current directory:

git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .

Run unit tests as: python setup.py test

Set up .env file with GitHub Access Token

Sensitive environment variables are stored in the .env file. This file is included in .gitignore intentionally, so that it is never committed. - Create a .env file and copy into it the contents of .env.template - Get your GitHub Access Token and add to the .env file.

Contributing

Contributions consistent with the style and quality of existing code are welcome. Be sure to follow the guidelines below.

Check the issues page of this repository for available work.

Committing

This project uses commitizen to ensure that commit messages remain well-formatted and consistent across different contributors.

Before committing for the first time, install commitizen and read Conventional Commits.

pip install commitizen

To start work on a new change, pull the latest develop and create a new topic branch (e.g. feature-resume-model, chore-test-update, bugfix-bad-bug).

git add .

To commit, run the following command (instead of git commit) and follow the directions:

cz commit

Contact

Contact cbc-help@brown.edu - this is our general help line, so please specify that your issue is with this site's contents

About

YAML-based genomics reference management.

compbiocore.github.io/refchef/

Resources

Readme
License
Activity

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Watchers

0 watching

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0 forks
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
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Packages
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
Resources
Readme
License
Activity
Stars
0 stars
Watchers
0 watching
Forks
0 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Repository files navigation
RefChef
TravisCoverageDocsLicensePyPi
RefChef is a reference management tool used to (1) document the exact
steps undertaken in the retrieval of genomic references, (2) maintain
the associated metadata, (3) provide a mechanism for automatically
reproducing retrieval and creation of an exact copy of genomic
references.
Installation
To install from PyPI using pip:
pip install refchef
To install using Anaconda Python:
conda install -c compbiocore refchef
Development
To install a development version from the current directory:
git clone https://github.com/compbiocore/refchef.git
cd refchef
pip install -e .
Run unit tests as: python setup.py test
Set up .env file with GitHub Access Token
Sensitive environment variables are stored in the .env file. This file
is included in .gitignore intentionally, so that it is never committed.
- Create a .env file and copy into it the contents of
.env.template - Get your GitHub Access
Token
and add to the .env file.
Contributing
Contributions consistent with the style and quality of existing code are
welcome. Be sure to follow the guidelines below.
Check the issues page of this repository for available work.
Committing
This project uses commitizen
to ensure that commit messages remain well-formatted and consistent
across different contributors.
Before committing for the first time, install commitizen and read
Conventional
Commits.
pip install commitizen

To start work on a new change, pull the latest develop and create a
new topic branch (e.g. feature-resume-model,
chore-test-update, bugfix-bad-bug).
git add .

To commit, run the following command (instead of git commit) and
follow the directions:
cz commit

Contact
Contact cbc-help@brown.edu - this is our general help line, so please
specify that your issue is with this site's contents
About
YAML-based genomics reference management.
compbiocore.github.io/refchef/
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