JULIE Lab

Scripts, classes and template code to run SMAC with a Spark-based webserver.

Jena Synthetic Clinical Corpus

The codebase behind our emotion embeddings project.

Code wrapped into a UIMA component that maps gene names found in scientific literature to NCBI Gene human gene IDs.

This is a small Java programm that uses the `ProcessBuilder` to call a Python programm on the command line and exchange data with it via standard input/output channels.

Create JCoRe UIMA pipelines with a command line interface and run them using an auto-generated XML configuration file.

The Parent POM of the JCoRe project.

Jena Semantic Explorer

GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).