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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstreamPublic

    Tools for distributed alignment of massive images

    Jupyter Notebook 95 25

  2. BigStitcher BigStitcherPublic

    ImgLib2/BDV implementation of Stitching for large datasets

    Java 83 17

  3. multifish multifishPublic

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 36 13

  4. JRCLUST JRCLUSTPublic

    JRCLUST

    MATLAB 35 23

  5. multiview-reconstruction multiview-reconstructionPublic

    Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    Java 34 26

  6. BigStitcher-Spark BigStitcher-SparkPublic

    Running compute-intense parts of BigStitcher distributed

    Java 31 20

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