Karr whole-cell modeling lab

Tools for creating and reusing high-quality spreadsheets

Utilities for whole-cell modeling such as logging, plotting, managing git repos, random number generation and others

Tools for building databases of experimental data for constructing whole-cell models

Utilities for testing Python code and its downstream dependencies, submitting coverage reports, conducting static analyses, and generating documenation

Utilities for packaging Python code

Framework for systematically and scalably designing whole-cell models from large datasets

A multi-algorithmic simulator for whole-cell models

A OAS3 compliant REST API for the Datanator integrated database