Kluger Lab

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1. FIt-SNE FIt-SNEPublic

   Fast Fourier Transform-accelerated Interpolation-based t-SNE (FIt-SNE)

   C++ 608 112

2. SpectralNet SpectralNetPublic

   Deep network that performs spectral clustering

   Python 330 103

3. ALRA ALRAPublic

   Imputation method for scRNA-seq based on low-rank approximation

   R 81 24

4. GeneTrajectory GeneTrajectoryPublic

   R implementation of GeneTrajectory

   R 71 9

5. t-SNE-Heatmaps t-SNE-HeatmapsPublic

   Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq

   R 48 11

6. pyFIt-SNE pyFIt-SNEPublic

   Python Wrapper for FIt-SNE

   C++ 46 12