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Laboratory for Pathogenesis of Clinical Drug Resistance and Persistence

All of our public projects can be found on GitLab: <https://gitlab.com/LPCDRP>. Some of them are mirrored here

1 follower
San Diego, CA
http://tuberculosis.sdsu.edu

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mummer-extras mummer-extrasPublic mirror
extra utilities for working with MUMmer-specific formats
Python 4 4
motif-variants motif-variantsPublic mirror
Detect Creation/Destruction of Sequence Motifs as a Result of Mutations
Python 1 1
biodiff biodiffPublic mirror
exact comparison of biological sequences
Shell
vcftools-extras vcftools-extrasPublic mirror
extra utilities for manipulating files in variant call format
Python
vep-extras vep-extrasPublic mirror
extra utilities for manipulating variant effect predictor annotations
Python
biomake biomakePublic mirror
Forked from percyfal/biomake
Makefile library for bioinformatics programs
Makefile

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Showing 10 of 10 repositories

hybran Public mirror
comparative prokaryotic genome annotation
LPCDRP/hybran's past year of commit activity
Python 0 0 0 0 Updated Mar 5, 2026
bioconda-recipes Public Forked from bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
LPCDRP/bioconda-recipes's past year of commit activity
Shell 0 4,097 0 0 Updated Apr 6, 2023
Compare-annotations Public Forked from rrwick/Compare-annotations
A script for comparing two annotations of the same genome
LPCDRP/Compare-annotations's past year of commit activity
Python 0GPL-3.0 7 0 0 Updated Aug 1, 2022
biodiff Public mirror
exact comparison of biological sequences
LPCDRP/biodiff's past year of commit activity
Shell 0 0 5 0 Updated Jun 14, 2018
biomake Public mirror Forked from percyfal/biomake
Makefile library for bioinformatics programs
LPCDRP/biomake's past year of commit activity
Makefile 0 3 0 0 Updated Feb 14, 2018
vcftools-extras Public mirror
extra utilities for manipulating files in variant call format
LPCDRP/vcftools-extras's past year of commit activity
Python 0 0 0 0 Updated Feb 14, 2018
motif-variants Public mirror
Detect Creation/Destruction of Sequence Motifs as a Result of Mutations
LPCDRP/motif-variants's past year of commit activity
Python 1 1 0 0 Updated Feb 14, 2018
pangenome_graphs Public Forked from aswarren/pangenome_graphs
Constructing pan genome graphs from "protein family" assignments
LPCDRP/pangenome_graphs's past year of commit activity
Python 0 6 0 0 Updated Dec 28, 2017
vep-extras Public mirror
extra utilities for manipulating variant effect predictor annotations
LPCDRP/vep-extras's past year of commit activity
Python 0 0 0 0 Updated Dec 1, 2016
mummer-extras Public mirror
extra utilities for working with MUMmer-specific formats
LPCDRP/mummer-extras's past year of commit activity
Python 4 4 0 2 Updated Oct 27, 2016

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