Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
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})();
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try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
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Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Update GettingStarted.md - #257

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Update GettingStarted.md#257
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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

@SimonKrughoffSimonKrughoff left a comment

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

@SimonKrughoffSimonKrughoff left a comment

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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@Madejski@kadrlica@SimonKrughoff
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

@SimonKrughoffSimonKrughoff left a comment

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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@Madejski@kadrlica@SimonKrughoff
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
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Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

@SimonKrughoffSimonKrughoff left a comment

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

@kadrlica

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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@Madejski@kadrlica@SimonKrughoff
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
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Update GettingStarted.md - #257

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Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links in the previous version which were pointing to the DP0 instructions

Reverting to a version that is for getting started on NCSA, for Stack Club members who are not DP0 delegates - fixes the links pointing to the DP0 instructions
@Madejski
Madejski requested a review from kadrlicaJuly 26, 2021 23:07
Corected the method of authentication, via .pgpass rather than the yaml file

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My only comment is that I think it would be good to have more explicit instruction about what needs to be changed in the notebook to make them work at NCSA

Comment threadGettingStarted/GettingStarted.md Outdated
Now if you wish, you can import the notebooks developed for DP0 into your instance of Jupyter notebook at NCSA, by issuing a git clone
command ```git clone https://github.com/rubin-dp0/tutorial-notebooks.git``` and now you can use the DP0 - developed notebooks on the DC2 data.
You might wish to create a separate directory for the DP0-developed material, but this depends how you organize your Rubin notebooks.
It is important to note that the location of the data repository accessible from IDF (``` s3://butler-us-central1-dp01 ```) is not the same as that accessible from NCSA (``` /repo/dc2 ```).

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You also have to add an instrument argument to the butler constructor. I think I'd prefer to have the changes users need to make be very explicit i.e. instead of
repo = 's3://butler-us-central1-dp01'
you need to change to
repo = '/repo/dc2'
and
You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim'

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@kadrlica - in response to your query about repos, I think that the repo difference is in my i, but we might as well add the other comment from Simon, namely You must provide an instrument in and data id e.g. 'instrument': 'LSSTCam-imSim' . Otherwise, I think it is ready for a merge. I like your grammar fixes!

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@Madejski I was wondering if Simon's comments have been addressed so we can merge this PR.

Comment threadGettingStarted/GettingStarted.md Outdated
* [Help with getting set up to run and edit the Stack Club tutorial notebooks](https://github.com/LSSTScienceCollaborations/StackClub/blob/master/GettingStarted/GettingStarted.md#running-and-contributing-to-the-stack-club-notebooks)
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The

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I think it would be more correct to say "distinct from the Interim Data Facility on Google Cloud used for Data Preview 0 (DP0)."

Comment threadGettingStarted/GettingStarted.md Outdated
First, a preamble: The instructions below are for setting up the Rubin account, and connecting to the Rubin Data Facility at NCSA,
used for the Rubin Stack Club members. This is
distinct from the Rubin Data Facility used for the work of Data Preview 0 (DP0) delegates, which is at the Interim Data Facility (IDF). The
instructions for connecting to the Rubin Science Platform as a DP0 delegate, go to https://dp0-1.lsst.io/dp0-delegate-resources/index.html

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"For instructions for connecting" (or some other grammar correction)

> You can get AnyConnect by pointing your browser at https://sslvpn.ncsa.illinois.edu/ and selecting the `ncsa-vpn-default` option (this will only work if you have a java-compatible browser, like firefox esr version<=52). If you already have the AnyConnect client installed, open it up and enter `sslvpn.ncsa.illinois.edu/` in its connection window. (**NB:** Make sure to use the `ncsa-vpn-default` group; this may not be the default group selected)

If you forget your password it can be reset following the instructions [here](https://developer.lsst.io/services/lsst-dev.html?highlight=reset#lsst-dev-password). If you have problems connecting to the NCSA services you can check their status and submit a help ticket [here](https://confluence.lsstcorp.org/display/DM/LSST+Service+Status+page).
> You will need to setup two-factor authentication with DUO. To setup DUO, follow the instructions herehttps://duo.security.ncsa.illinois.edu/portal. DUO can be configured for smartphone or table access (currently dumb phones are not supported). When AnyConnect asks for your "second password", it wants the 6-digit number in your Duo app. (This may need refreshing, each one can only be used once.) (**NB:** Use "NCSA as the identity provider", not your institution).

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https://duo.security.ncsa.illinois.edu/portal sends me to a webpage that requests me to login with kerberos.

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3 participants

@Madejski@kadrlica@SimonKrughoff