Merge discvr 19.3 - #9

Closed

bbimber wants to merge 26 commits into

fb_merge_discvr-19.3

Commits on Jan 28, 2020

Improve logging
bbimber
committed
62274aa

Commits on Jan 29, 2020

Preserve HTO sort order
bbimber
committed
3285838
Improve reporting for discordant HTO calls
bbimber
committed
613c552

Commits on Jan 31, 2020

Support multiple types of scatter/gather (#3)
bbimber
authored
43c1ad1
Prepare to refactor Seurat/Hashing
bbimber
committed
ab6c2f3

Commits on Feb 3, 2020

Allow seurat pipeline to automatically call and store HTO calls
bbimber
committed
32d6857
Move seurat scripts to tcrdb module
bbimber
committed
75c2d79
Update cDNA TSV parsing
bbimber
committed
03ec6b9
Abort cell hashing calls if only single HTO used
bbimber
committed
6d7cf2e
Bugfix cite-seq
bbimber
committed
2acb30d
When total cell barcodes with CDR3 is low, allow all valid cells to be included for hashing
bbimber
committed
79433de
remove duplicate percent signs
bbimber
committed
b5aa826
Update logic to determine if cell hashing is used
bbimber
committed
59a4b7c
Dont perform column/cell filtering on HTOs when a whitelist of HTOs is used
bbimber
committed
e930d50

Commits on Feb 4, 2020

Commits on Feb 6, 2020

capture changes to prime-seq LK install script
bbimber
committed
a593d8e

Commits on Feb 7, 2020

Commits on Feb 8, 2020

Update name of branch sync task
bbimber
committed
af65763
Merge discvr-19.3 to develop
bbimber
committed
530d3b5