Merge 24.7 to develop - #315

Merged

bbimber merged 22 commits into

fb_merge_24.7_to_develop

Sep 25, 2024

Commits on Aug 28, 2024

Bugfix to 10x metrics handling
bbimber
committed
3be4d6d
Add natural sort to instrument_runs table
bbimber
committed
90dc3ff

Commits on Aug 30, 2024

Bugfix to readset import when one pair is archived to SRA
bbimber
committed
d5cb20d
Bugfix to readset import when one pair is archived to SRA
bbimber
committed
cf1fa97
Bugfix to readset import when one pair is archived to SRA
bbimber
committed
cb09960

Commits on Sep 3, 2024

Remove old query
bbimber
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f41acdb
Query syntax
bbimber
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bef32e4

Commits on Sep 4, 2024

Support native-pair-hmm-threads for HaplotypeCaller
bbimber
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9d7c18c

Commits on Sep 6, 2024

Increase logging
bbimber
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8377f37

Commits on Sep 7, 2024

Update samtools version
bbimber
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d8bab7e

Commits on Sep 8, 2024

Update JBrowse version
bbimber
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74cc872
Update JBrowse version and React
bbimber
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65ad49d
JBrowseTest fix
bbimber
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0cf0b52
JBrowseTest fix
bbimber
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2efd673

Commits on Sep 9, 2024

Adjust nimble defaults
bbimber
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0079ab9
Store nimble version
bbimber
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ca6f47c

Commits on Sep 10, 2024

Skip cellranger-specific complete steps
bbimber
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c5a4578

Commits on Sep 13, 2024

UpdateSeuratPrototype now updates DB record
bbimber
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de92181

Commits on Sep 17, 2024

Add param to force re-processing of cell hashing
bbimber
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003dfae

Commits on Sep 19, 2024

Switch RIRA project location
bbimber
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aa00302

Commits on Sep 24, 2024

Fix merge conflicts
bbimber
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6cdaf47
Update jbrowse
bbimber
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bcc1703