Merge discvr-26.7 to develop - #432

Merged

bbimber merged 30 commits into

fb_merge_26.7_to_develop

Aug 26, 2026

Commits on Jul 5, 2026

Improve logic for SequenceAnalysisMaintenanceTask and cancellation
bbimber
committed
4f9d04d

Commits on Jul 15, 2026

Bump websocket-driver
dependabot[bot]
authored
32d0059

Commits on Jul 16, 2026

Merge pull request #403 from BimberLab/dependabot/npm_and_yarn/jbrowse/npm_and_yarn-cd62b4b37a
bbimber
authored
3e9b457

Commits on Jul 21, 2026

Bugfix to SnpEff indexing
bbimber
committed
7246134
Improve job resume for MergeSeurat
bbimber
committed
09e4044

Commits on Jul 22, 2026

Commits on Jul 24, 2026

Bump brace-expansion
dependabot[bot]
authored
130f8dd
Merge pull request #404 from BimberLab/dependabot/npm_and_yarn/jbrowse/npm_and_yarn-aa0c14d59f
bbimber
authored
4fec943
Bump the npm_and_yarn group across 1 directory with 3 updates
dependabot[bot]
authored
520162a
Merge pull request #405 from BimberLab/dependabot/npm_and_yarn/jbrowse/npm_and_yarn-e2eb091ba5
bbimber
authored
bf060ef
npm updates
bbimber
committed
33923d5
npm updates
bbimber
committed
f921859
Restore @labkey/build 9.x
bbimber
committed
cde12f1
Merge discvr-26.3 to discvr-26.7
bbimber
committed
4a5c78b
Merge pull request #407 from BimberLab/26.7_fb_merge
bbimber
authored
9fe16d2

Commits on Jul 28, 2026

Error checking in maintenance tasks
bbimber
committed
b198024

Commits on Aug 4, 2026

Upgrade to @labkey/build 10.x (#408)
bbimber
and
Sebastian Benjamin
authored
c4887d0
Bump fast-uri in /jbrowse in the npm_and_yarn group across 1 directory (#414)
dependabot[bot]
authored
7291ad1

Commits on Aug 6, 2026

Bugfix to cDNA import and chemistry
bbimber
committed
7b42a66

Commits on Aug 10, 2026

Limit ProcessSingleCellHandler to just Loupe Files
bbimber
committed
f8af4aa

Commits on Aug 12, 2026

Bump dompurify in /jbrowse in the npm_and_yarn group across 1 directory (#415)
dependabot[bot]
authored
02ff1ba

Commits on Aug 17, 2026

Declare the primary genome in pipeline jobs rather than infer it (#417)
bbimber
authored
9be9d9a

Commits on Aug 18, 2026

Fix security issues flagged by Claude (#418)
bbimber
authored
e5e2350

Commits on Aug 20, 2026

Revert switch to LabKeyProcessBuilder
bbimber
committed
86fa3d7
Try Apache-CLI to parse cluster commands
bbimber
committed
0bdc433
Update gitignore
bbimber
committed
393d7f8

Commits on Aug 21, 2026

Expand the workaround for birth_condition
bbimber
committed
bb4a7bf

Commits on Aug 25, 2026

Bugfix to WhatsHapStep
bbimber
committed
00505ae
Merge discvr-26.7 to develop
bbimber
committed
f2d37fc