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Enable data region filtration based on Ontology concepts and hierarchy - #96

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Enable data region filtration based on Ontology concepts and hierarchy#96
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Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
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} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
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try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
Skip to content

Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
fb_ontFilter
May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
developfrom
fb_ontFilter

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@Sigmonia

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
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Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
fb_ontFilter
May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
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fb_ontFilter

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
Skip to content

Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
fb_ontFilter
May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
developfrom
fb_ontFilter

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@Sigmonia

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
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Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
fb_ontFilter
May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
developfrom
fb_ontFilter

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
Skip to content

Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
fb_ontFilter
May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
developfrom
fb_ontFilter

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@Sigmonia

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); })(); Enable data region filtration based on Ontology concepts and hierarchy by Sigmonia · Pull Request #96 · LabKey/labkey-api-js · GitHub
Skip to content

Enable data region filtration based on Ontology concepts and hierarchy - #96

Merged
Sigmonia merged 12 commits into
developfrom
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May 1, 2021
Merged

Enable data region filtration based on Ontology concepts and hierarchy#96
Sigmonia merged 12 commits into
developfrom
fb_ontFilter

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Rationale

Item #8670 - https://docs.google.com/document/d/1QmHYktA4uNPxiSeid1kX2TakE2E0QPU4ZBkuSwTNeZI/edit?usp=sharing
Ontology, data region column filtering

Related Pull Requests

Changes

  • Added Filter.Types.ONTOLOGY_NOT_IN_SUBTREE and Filter.Types.ONTOLOGY_IN_SUBTREE

update tree on filter type changes
cleanup styling
move filter icon to right
TODO: use paths for SubTree filters

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There is an empty file Ontology.ts in this PR is that needed or can it be removed?

Comment threadCHANGELOG.md Outdated
@@ -1,3 +1,6 @@
## 1.3.TBD - TBD

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I assume that this would be a minor version bump to 1.4.0 since it is adding new functionality.

Comment threadsrc/labkey/filter/Types.ts Outdated
labkey-nicka
labkey-nicka previously requested changes Apr 22, 2021

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@labkey-ians you'll need to update the filter_types_snapshot.json to get the tests passing. This is a snapshot that helps to ensure there are no accidental modifications of our filter types. I'd recommend taking a look at the test failure to ensure that all the values for these new types are as you expect. After that you can follow the steps in Types.spec.ts to get updated JSON which can be used to update the filter_types_snapshot.json.

@Sigmonia
Sigmonia dismissed labkey-nicka’s stale reviewMay 1, 2021 19:39

Requested changes made and tests are passing.

@Sigmonia
Sigmonia merged commit 2745620 into developMay 1, 2021
@Sigmonia
Sigmonia deleted the fb_ontFilter branch May 1, 2021 19:41
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