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    Achievement: YOLOAchievement: Pull Shark

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    Pinned Loading

    1. windowCNVwindowCNVPublic

      A window-based refinement of inferCNV for more accurate CNV detection from single-cell RNA-seq data, featuring customizable smoothing, cell type annotations, and event-level evaluation tools.

      Jupyter Notebook

    2. cross-species-immune-transfer-learningcross-species-immune-transfer-learningPublic

      Transfer learning framework (CoGAPS + projectR) quantifying cross-species conservation of tumor microenvironment transcriptional programs between mouse models and human melanoma, with immunotherapy…

      Jupyter Notebook

    3. melatonin-pbpkpd-modelmelatonin-pbpkpd-modelPublic

      Physiologically based pharmacokinetic-pharmacodynamic (PBPK/PD) model of oral melatonin with circadian oscillator coupling, virtual population simulation, and interactive Shiny app for personalized…

      MATLAB

    4. danielchen05/scRNA-cross-donor-generalizationdanielchen05/scRNA-cross-donor-generalizationPublic

      scRNA-seq cell type classification benchmark showing that random cell-level splits inflate performance due to donor-level leakage

      Jupyter Notebook 1

    5. mtl-autocontourmtl-autocontourPublic

      Automated entorhinal/MTL surface contouring and top/bottom cutting via shape-stratified LDDMM template-boundary transfer (py-lddmm). Validated on BIOCARD.

      Python