Make FSGUI compatible with newer Trodes network protocol

config.yaml

@@ -1,61 +1,37 @@
 nodes:
-- type_id: trodes-linearized-binned-camera-type
-  instance_id: 47ecacbc-5419-11ee-9d4c-3cecefb199de
-  nickname: Linearized binned Trodes camera
-  track_linearization:
-    filename: /home/lorenlab/Documents/Trodes_stuff/geometries/maze_linear.trackgeometry
-    segments:
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-    - !!python/tuple
-      - 0
-      - 0
-- type_id: trodes-spike-data-type
-  instance_id: 5d646f30-5419-11ee-9d4c-3cecefb199de
-  nickname: Trodes Spikes
-  voltage_scaling_factor: 0.195
-- type_id: trodes-lfp-data-type
-  instance_id: dde105ce-5419-11ee-9d4c-3cecefb199de
-  nickname: Trodes LFP
-- type_id: ripple-new-filter-type
-  instance_id: d2360494-541a-11ee-9d4c-3cecefb199de
-  nickname: Ripple filter (new)
-  source_id: dde105ce-5419-11ee-9d4c-3cecefb199de
-  num_signals: 64
-  bp_order: 2
-  bp_crit_freqs_low: 150
-  bp_crit_freqs_high: 250
-  lfp_sample_rate: 1500
-  env_num_taps: 13
-  env_band_edges_low: 50
-  env_band_edges_high: 55
-  sd_threshold: 3.5
-  n_above_threshold: 1
-  tetrode_selection:
-    is_include: true
-    tetrodes:
-    - 0
-    - 1
-    - 31
-    - 62
-  update_mean_sd: true
-  display_channel: 1
+- type_id: trodes-camera-data-type
+  instance_id: cb37189e-bc24-11f0-91ca-a0369f6f691e
+  nickname: Trodes Camera
+- type_id: geometry-filter-type
+  instance_id: d21a00a4-bc24-11f0-91ca-a0369f6f691e
+  nickname: Geometry filter
+  source_id: null
+  trackgeometry:
+    filename: /home/xulu/Xulu/Behavior/Geometry/for_sleepbox_recording.trackgeometry
+    zone_id: 2
+  cameraWidth: 1000
+  cameraHeight: 995
+- type_id: trodes-digital-pulse-action-type
+  instance_id: d896866e-bc24-11f0-91ca-a0369f6f691e
+  nickname: Digital Pulsetrain
+  trigger_id:
+    id: d5b04c5a-bc24-11f0-91ca-a0369f6f691e
+    data:
+      label: Geometry filter
+      type: filter
+      value: d21a00a4-bc24-11f0-91ca-a0369f6f691e
+    children: []
+  condition_id: null
+  pulseLength: 1
+  nPulses: 1
+  preDelay: 0
+  sequencePeriod: 100
+  nOutputTrains: 1
+  trainInterval: 1000
+  primaryBit: 1
+  lockout_time: 0
+  functNum: 0
+  action_enabled: true
+  off_when_false: false
+  delay_enabled: true
+  reward_based_trigger_enabled: false

fsgui/__main__.py

@@ -6,20 +6,21 @@
 import fsgui.config
 import fsgui.filter
 import fsgui.simulation
+import fsgui.spikegadgets.trodes as trodes
 import fsgui.spikegadgets
 import qtapp
 import qtgui
 
 if __name__ == "__main__":
     try:
-        args = fsgui.spikegadgets.trodes.TrodesSpawnArgParser().parse_args(sys.argv)
-        network = fsgui.spikegadgets.trodes.TrodesNetworkLocation(
+        args = trodes.TrodesSpawnArgParser().parse_args(sys.argv)
+        network = trodes.TrodesNetworkLocation(
             args['serverAddress'],
             args['serverPort']
         )
     except Exception as e:
         logging.warning('command line arguments were not found, using default network location')
-        network = fsgui.spikegadgets.trodes.TrodesNetworkLocation("tcp://127.0.0.1", 49152)
+        network = trodes.TrodesNetworkLocation("tcp://127.0.0.1", 49152)
 
     qtgui.run_qt_app(functools.partial(
         qtapp.window.FSGuiWindow,

fsgui/filter/lfp/ripple_new.py

@@ -153,7 +153,7 @@ def write_template(self, config = None):
                 'upper': 200,
                 'units': 'power',
                 'decimals': 2,
-                'default': 0,
+                'default': config['means_magic_input'],
                 'tooltip': 'Hard coded ripple LFP mean, used for mean + threshold * sd',
                 'live_editable': True,
             },
@@ -165,7 +165,7 @@ def write_template(self, config = None):
                 'upper': 200,
                 'units': 'power',
                 'decimals': 2,
-                'default': 0,
+                'default': config['sigmas_magic_input'],
                 'tooltip': 'Hard coded ripple LFP sd, used for mean + threshold * sd',
                 'live_editable': True,
             },

fsgui/network.py

@@ -9,7 +9,7 @@ def __init__(self, location=None):
             self._sock.bind(location)
             self._location = location
         else:
-            self._sock.bind_to_random_port('tcp://0.0.0.0')
+            self._sock.bind_to_random_port('tcp://127.0.0.1')
             self._location = self._sock.get_string(zmq.LAST_ENDPOINT)
 
     def send(self, data):
@@ -41,4 +41,4 @@ def recv(self, timeout=None):
             assert mask == 1
             return sock.recv_json()
         else:
-            return None
+            return None