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3 followers · 7 following
  • AD lab
  • Quebec

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Achievement: Pull Sharkx2

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Achievement: Pull Sharkx2

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Louis-MG/README.md

Hello there !

I am a bioinformatician at the CHUL in Quebec, Canada. I got my Bachelor in Biology at the University of Lausanne (UNIL) in 2020 and a Msc in Bioinformatics from the Université Claude-Bernard Lyon 1 (France).

Interests:

My main interests in bioinformatics is the development of tools. I work on metagenomics: shotgun and 16S on the human skin microbiote, and aDNA.

Languages:

Python

bash

R

Willing to learn Rust !

Repo:

You will find :

  • META-DIFF, a pipeline for shotgun metagenomics differential abundance of sequences
  • rKmerBroom, a modified version of aKmerBroom for a currently ongoing project (ancient DNA samples decontamination)
  • RBD, a work based on MNHN-Tree-Tools for recursive binary clustering of DNA sequences
  • soon: the repository for the benchmark of 16S pipelines, aDNA: the repository for our Antarctica aDNA publication

Pinned Loading

  1. RecursiveBinaryDivisorRecursiveBinaryDivisorPublic

    Script to use the mnhn-tree-tools in a specific way. Uses cluster_dbscan_pca to divide each cluster in two clusters, until further division cannot be done.

    F*

  2. META-DIFFMETA-DIFFPublic

    This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.

    Python

  3. bioinformatic-skillsbioinformatic-skillsPublic

    Repository for bioinformatic and more general scientific skills.

    Python 2

  4. GG2_2024_for_Kraken2GG2_2024_for_Kraken2Public

    Provides the script to GG2 2024 for Kraken2.

    Python