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StarBLAST

StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.

StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.

What is SequenceServer?

SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).

The StarBLAST Suite

Read more about StarBLAST here:

Acknowledgements

The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).

About

StarBLAST allows BLAST scalability by distributing jobs across computer systems.

starblast.readthedocs.io/en/latest/

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
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3 watching
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
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Stars
2 stars
Watchers
3 watching
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9 forks
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
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Stars
2 stars
Watchers
3 watching
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9 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
License
Activity
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Stars
2 stars
Watchers
3 watching
Forks
9 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
License
Activity
Custom properties
Stars
2 stars
Watchers
3 watching
Forks
9 forks
Report repository
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, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
License
Activity
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Stars
2 stars
Watchers
3 watching
Forks
9 forks
Report repository
Releases
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Used by
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

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StarBLAST
StarBLAST is a scalable extension of SequenceServer BLAST, making BLAST accessible to educators and researchers running classroom-scale searches concurrently.
StarBLAST utilizes CCTOOLS for faster, distributed computing and CyVerse’s Visual Interactive Computing Environment (VICE). For a more in depth explaination and step-by-step tutorials of the whole StarBLAST collection, visit our documentation page.
What is SequenceServer?
SequenceServer is a front-end implementation of BLAST with improved GUI and customizable database input developed by the Wurmlab at Queen Mary University of London (Priyam et al., 2019). However, it is limited scaling and may be difficult to deploy for some people. StarBLAST extends SequenceServer for easier deployment and to scale for a larger number of simultaneous users (e.g., students).
The StarBLAST Suite
Read more about StarBLAST here:
Acknowledgements
The StarBLAST team thanks the CCTools and SequenceServer teams for making StarBLAST possible. We also thank the Advanced Cyberifrastracture Concepts (ACIC) at University of Arizona for their contributions to the project (final project presentation from the class).
About
StarBLAST allows BLAST scalability by distributing jobs across computer systems.
starblast.readthedocs.io/en/latest/
Topics
blastdistributed-computingeducationgenetics
Resources
Readme
License
Activity
Custom properties
Stars
2 stars
Watchers
3 watching
Forks
9 forks
Report repository
Releases
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Used by
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