VEO & MGX Groups

Course website for the Viromics - Bioinformatics module 2026

Jaeger is a quick and precise tool for detecting phages in sequence assemblies.

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

This repository contains code and data relative to paper "High throughput genomic feature extraction reveals prokaryotic adaptations to the abiotic environment".

Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling

FxTractor is a high-throughput snakemake pipeline to extract features from prokaryotic genomes.

Metabolomics analysis with LC-HRMS

This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.