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Some of the PSMs do have the corresponding scores in mzId

Status: Open.

#157In MSGFPlus/msgfplus;

· ypriverol opened on Dec 4, 2024

Does MSGF+ support Bruker TDF files?

question

Status: Open.

#155In MSGFPlus/msgfplus;

· hxxhust163 opened on Jul 13, 2024

What is peptide isoform and how will it affect the MSGF+ search results?

question

Status: Open.

#154In MSGFPlus/msgfplus;

· yonghanyu opened on Apr 12, 2024

How to validate the MSGF+ peptide searching data?

question

Status: Open.

#153In MSGFPlus/msgfplus;

· MarcoPineapollo opened on Apr 2, 2024

Question about my parameter file

question

Status: Open.

#151In MSGFPlus/msgfplus;

· JannikSchneider12 opened on Feb 1, 2024

Using trypsin vs no enzyme changes score on same PSM?

question

Status: Open.

#148In MSGFPlus/msgfplus;

· glormph opened on Oct 20, 2023

Question about interpreting a low Qvalue but high(er) Evalue

question

Status: Open.

#147In MSGFPlus/msgfplus;

· Hassan-1991 opened on Aug 11, 2023

Supported OpenJDK version

question

Status: Open.

#145In MSGFPlus/msgfplus;

· bernt-matthias opened on Jan 16, 2023

no valid spectra

Status: Open.

#144In MSGFPlus/msgfplus;

· simonklaes opened on Jan 6, 2023

data format matters?

Status: Open.

#142In MSGFPlus/msgfplus;

· hxxhust163 opened on Nov 25, 2022

library error

question

Status: Open.

#141In MSGFPlus/msgfplus;

· XuanangD opened on Jul 17, 2022

Java.lang.NegativeArraySizeException

Status: Open.

#140In MSGFPlus/msgfplus;

· Luxxii opened on Jul 1, 2022