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[Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

Description

@bsmin10010-cloud

Hello, Marquez team.

I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

In Utils.java (specifically inside the newDatasetVersionFor method):

 private static Version newDatasetVersionFor(DatasetVersionData data) {
final byte[] bytes =
VERSION_JOINER
.join(
data.getNamespace(),
data.getSourceName(),
data.getDatasetName(),
data.getPhysicalName(),
data.getSchemaLocation(),
data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
data.getLifecycleState(),
data.getRunId())
.getBytes(UTF_8);
return Version.of(UUID.nameUUIDFromBytes(bytes));
}

Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

Affected point

API : get-dataset
Query : ColumnLineageDao.getLineageRowsForDatasets

Proposed Solution:

The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

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      [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs · Issue #3082 · MarquezProject/marquez · GitHub
      Skip to content

      [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

      Description

      @bsmin10010-cloud

      Hello, Marquez team.

      I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
      I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

      Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

      I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

      In Utils.java (specifically inside the newDatasetVersionFor method):

       private static Version newDatasetVersionFor(DatasetVersionData data) {
      final byte[] bytes =
      VERSION_JOINER
      .join(
      data.getNamespace(),
      data.getSourceName(),
      data.getDatasetName(),
      data.getPhysicalName(),
      data.getSchemaLocation(),
      data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
      data.getLifecycleState(),
      data.getRunId())
      .getBytes(UTF_8);
      return Version.of(UUID.nameUUIDFromBytes(bytes));
      }
      

      Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

      Affected point

      API : get-dataset
      Query : ColumnLineageDao.getLineageRowsForDatasets

      Proposed Solution:

      The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

      I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

      Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

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          Skip to content

          [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

          Description

          @bsmin10010-cloud

          Hello, Marquez team.

          I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
          I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

          Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

          I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

          In Utils.java (specifically inside the newDatasetVersionFor method):

           private static Version newDatasetVersionFor(DatasetVersionData data) {
          final byte[] bytes =
          VERSION_JOINER
          .join(
          data.getNamespace(),
          data.getSourceName(),
          data.getDatasetName(),
          data.getPhysicalName(),
          data.getSchemaLocation(),
          data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
          data.getLifecycleState(),
          data.getRunId())
          .getBytes(UTF_8);
          return Version.of(UUID.nameUUIDFromBytes(bytes));
          }
          

          Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

          Affected point

          API : get-dataset
          Query : ColumnLineageDao.getLineageRowsForDatasets

          Proposed Solution:

          The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

          I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

          Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

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              , 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs · Issue #3082 · MarquezProject/marquez · GitHub
              Skip to content

              [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

              Description

              @bsmin10010-cloud

              Hello, Marquez team.

              I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
              I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

              Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

              I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

              In Utils.java (specifically inside the newDatasetVersionFor method):

               private static Version newDatasetVersionFor(DatasetVersionData data) {
              final byte[] bytes =
              VERSION_JOINER
              .join(
              data.getNamespace(),
              data.getSourceName(),
              data.getDatasetName(),
              data.getPhysicalName(),
              data.getSchemaLocation(),
              data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
              data.getLifecycleState(),
              data.getRunId())
              .getBytes(UTF_8);
              return Version.of(UUID.nameUUIDFromBytes(bytes));
              }
              

              Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

              Affected point

              API : get-dataset
              Query : ColumnLineageDao.getLineageRowsForDatasets

              Proposed Solution:

              The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

              I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

              Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

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                  , 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs · Issue #3082 · MarquezProject/marquez · GitHub
                  Skip to content

                  [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

                  Description

                  @bsmin10010-cloud

                  Hello, Marquez team.

                  I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
                  I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

                  Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

                  I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

                  In Utils.java (specifically inside the newDatasetVersionFor method):

                   private static Version newDatasetVersionFor(DatasetVersionData data) {
                  final byte[] bytes =
                  VERSION_JOINER
                  .join(
                  data.getNamespace(),
                  data.getSourceName(),
                  data.getDatasetName(),
                  data.getPhysicalName(),
                  data.getSchemaLocation(),
                  data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
                  data.getLifecycleState(),
                  data.getRunId())
                  .getBytes(UTF_8);
                  return Version.of(UUID.nameUUIDFromBytes(bytes));
                  }
                  

                  Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

                  Affected point

                  API : get-dataset
                  Query : ColumnLineageDao.getLineageRowsForDatasets

                  Proposed Solution:

                  The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

                  I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

                  Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

                  Metadata

                  Metadata

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                  No one assigned

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                      , 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs · Issue #3082 · MarquezProject/marquez · GitHub
                      Skip to content

                      [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

                      Description

                      @bsmin10010-cloud

                      Hello, Marquez team.

                      I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
                      I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

                      Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

                      I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

                      In Utils.java (specifically inside the newDatasetVersionFor method):

                       private static Version newDatasetVersionFor(DatasetVersionData data) {
                      final byte[] bytes =
                      VERSION_JOINER
                      .join(
                      data.getNamespace(),
                      data.getSourceName(),
                      data.getDatasetName(),
                      data.getPhysicalName(),
                      data.getSchemaLocation(),
                      data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
                      data.getLifecycleState(),
                      data.getRunId())
                      .getBytes(UTF_8);
                      return Version.of(UUID.nameUUIDFromBytes(bytes));
                      }
                      

                      Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

                      Affected point

                      API : get-dataset
                      Query : ColumnLineageDao.getLineageRowsForDatasets

                      Proposed Solution:

                      The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

                      I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

                      Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

                      Metadata

                      Metadata

                      Assignees

                      No one assigned

                        Labels

                        No labels
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                          No milestone

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                          Skip to content

                          [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

                          Description

                          @bsmin10010-cloud

                          Hello, Marquez team.

                          I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
                          I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

                          Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

                          I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

                          In Utils.java (specifically inside the newDatasetVersionFor method):

                           private static Version newDatasetVersionFor(DatasetVersionData data) {
                          final byte[] bytes =
                          VERSION_JOINER
                          .join(
                          data.getNamespace(),
                          data.getSourceName(),
                          data.getDatasetName(),
                          data.getPhysicalName(),
                          data.getSchemaLocation(),
                          data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
                          data.getLifecycleState(),
                          data.getRunId())
                          .getBytes(UTF_8);
                          return Version.of(UUID.nameUUIDFromBytes(bytes));
                          }
                          

                          Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

                          Affected point

                          API : get-dataset
                          Query : ColumnLineageDao.getLineageRowsForDatasets

                          Proposed Solution:

                          The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

                          I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

                          Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

                          Metadata

                          Metadata

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                          No one assigned

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                            No labels
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                            No type

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                            No projects

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                              None yet

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                              [Bug] Inclusion of runId in DatasetVersion hash causes version explosion and query timeouts in high-frequency jobs #3082

                              Description

                              @bsmin10010-cloud

                              Hello, Marquez team.

                              I am operating a Marquez instance integrated with Airflow, running high-frequency batch jobs (e.g., every minute).
                              I encountered a critical performance issue where the dataset_versions and column_lineage tables grew abnormally large , causing the dataset lineage query to take over 10 seconds or timeout.

                              Upon investigation, I found that Marquez creates a new dataset version for every single run, even when the schema and dataset facets remain exactly the same.

                              I dug into the source code and identified that runId is included in the hashing logic for generating the DatasetVersion UUID.

                              In Utils.java (specifically inside the newDatasetVersionFor method):

                               private static Version newDatasetVersionFor(DatasetVersionData data) {
                              final byte[] bytes =
                              VERSION_JOINER
                              .join(
                              data.getNamespace(),
                              data.getSourceName(),
                              data.getDatasetName(),
                              data.getPhysicalName(),
                              data.getSchemaLocation(),
                              data.getFields().stream().map(Utils::joinField).collect(joining(VERSION_DELIM)),
                              data.getLifecycleState(),
                              data.getRunId())
                              .getBytes(UTF_8);
                              return Version.of(UUID.nameUUIDFromBytes(bytes));
                              }
                              

                              Since schedulers like Airflow generate a unique runId for every execution, this logic forces Marquez to generate a new DatasetVersion UUID every minute, regardless of whether the actual data/schema has changed.

                              Affected point

                              API : get-dataset
                              Query : ColumnLineageDao.getLineageRowsForDatasets

                              Proposed Solution:

                              The DatasetVersion identity should depend on the state of the dataset (Schema, Namespace, Name), not the provenance (Run ID).

                              I suggest removing data.getRunId() from the version hashing logic. When I locally patched the code by removing that line, Marquez correctly reused the existing version UUID when the schema didn't change, and the performance issue was resolved.

                              Could you please review this behavior? Ideally, runId should only be associated with the version as a foreign key, not as a seed for the version hash itself.

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