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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all
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try {
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var __re = new RegExp('^' + "github\\.com" + '
MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Force GitHub README to respect dark mode (function() { var style = document.createElement('style'); style.textContent = ' .markdown-body { color-scheme: dark light; } .markdown-body pre { background: #161b22 !important; } .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; } .markdown-body table th, .markdown-body table td { border-color: #30363d !important; } .markdown-body img { background: #0d1117; } .markdown-body blockquote { border-left-color: #8b949e; } .markdown-body hr { border-color: #30363d; } '; document.head.appendChild(style); })(); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Highlight search terms from Google/DuckDuckGo/Bing referrer (function() { var ref = document.referrer; var terms = []; if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) { var url = new URL(ref); var q = url.searchParams.get('q') || url.searchParams.get('p'); if (q) { terms = q.split(/\s+/).filter(function(t) { return t.length > 2; }); } } if (terms.length === 0) return; var style = document.createElement('style'); style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }'; document.head.appendChild(style); function highlight(node) { if (node.nodeType === 3) { // text node var text = node.textContent; var found = false; terms.forEach(function(term) { var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi'); if (regex.test(text)) { found = true; var frag = document.createDocumentFragment(); var parts = text.split(regex); parts.forEach(function(part, i) { if (i % 2 === 0) { frag.appendChild(document.createTextNode(part)); } else { var span = document.createElement('span'); span.className = 'userscript-highlight'; span.textContent = part; frag.appendChild(span); } }); node.parentNode.replaceChild(frag, node); } }); } else if (node.nodeType === 1 && node.childNodes) { // element var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT']; if (!skipTags.includes(node.tagName)) { Array.from(node.childNodes).forEach(highlight); } } } highlight(document.body); // Re-highlight on dynamic content var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1 || node.nodeType === 3) highlight(node); }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Strip utm_, fbclid, gclid, etc. from all links on page (function() { var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content', 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid', 'ref', 'ref_src', 'source', 'medium', 'campaign']; function cleanUrl(url) { try { var u = new URL(url, window.location.origin); var changed = false; trackingParams.forEach(function(p) { if (u.searchParams.has(p)) { u.searchParams.delete(p); changed = true; } }); return changed ? u.toString() : url; } catch (e) { return url; } } function cleanLinks() { document.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } cleanLinks(); var observer = new MutationObserver(function(mutations) { mutations.forEach(function(m) { m.addedNodes.forEach(function(node) { if (node.nodeType === 1) { if (node.tagName === 'A') cleanLinks(); node.querySelectorAll('a[href]').forEach(function(a) { var clean = cleanUrl(a.href); if (clean !== a.href) a.href = clean; }); } }); }); }); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + ' MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Auto-enable theater mode on YouTube (function() { function tryTheater() { var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]'); if (btn && !btn.classList.contains('activated')) { btn.click(); } } // Try immediately tryTheater(); // Try after navigation (SPA) var lastUrl = location.href; setInterval(function() { if (location.href !== lastUrl) { lastUrl = location.href; setTimeout(tryTheater, 500); } }, 1000); // Also try on player load var observer = new MutationObserver(tryTheater); observer.observe(document.body, { childList: true, subtree: true }); })(); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Remove or un-stick sticky/fixed headers that block content (function() { function unstick() { document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) { if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') { el.style.position = 'static'; el.style.top = 'auto'; el.style.zIndex = 'auto'; } }); } unstick(); var observer = new MutationObserver(unstick); observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] }); })(); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + ' MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook

, 'i'); if (__m === '*' || __re.test(location.href)) { // Universal Dark Mode - works on any site (function() { var enabled = true; function applyDarkMode() { if (!enabled) return; // Create style element if it doesn't exist var style = document.getElementById('universal-dark-mode-style'); if (!style) { style = document.createElement('style'); style.id = 'universal-dark-mode-style'; document.head.appendChild(style); } // Dark mode CSS - inverts colors but preserves images/video style.textContent = ' /* Invert everything except media */ html { filter: invert(1) hue-rotate(180deg) !important; background: #1a1a2e !important; } /* Restore images, videos, iframes, canvas */ img, video, iframe, canvas, svg, picture, [style*="background-image"] { filter: invert(1) hue-rotate(180deg) !important; } /* Preserve specific elements that should not be inverted */ .no-dark-mode, .no-dark-mode *, [data-theme="light"], [data-theme="light"], .ace_editor, .ace_editor *, .CodeMirror, .CodeMirror *, .monaco-editor, .monaco-editor *, .markdown-body pre, .markdown-body pre *, .highlight, .highlight *, pre code, pre code * { filter: none !important; } /* Fix common UI elements */ .modal, .popup, .dropdown-menu, .tooltip, .popover { filter: invert(1) hue-rotate(180deg) !important; background: #2d2d44 !important; border-color: #444 !important; } /* Scrollbars */ ::-webkit-scrollbar { background: #1a1a2e !important; } ::-webkit-scrollbar-thumb { background: #444 !important; } ::-webkit-scrollbar-thumb:hover { background: #555 !important; } /* Selection */ ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; } ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; } '; } function removeDarkMode() { var style = document.getElementById('universal-dark-mode-style'); if (style) style.remove(); } // Toggle with Alt+Shift+D document.addEventListener('keydown', function(e) { if (e.altKey && e.shiftKey && e.key === 'D') { e.preventDefault(); enabled = !enabled; if (enabled) { applyDarkMode(); console.log('[Universal Dark Mode] Enabled'); } else { removeDarkMode(); console.log('[Universal Dark Mode] Disabled'); } } }); // Apply on load applyDarkMode(); // Re-apply on dynamic content var observer = new MutationObserver(function(mutations) { if (enabled && !document.getElementById('universal-dark-mode-style')) { applyDarkMode(); } }); observer.observe(document.head, { childList: true }); console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle'); })(); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })(); MayC06 · GitHub
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MayC06/README.md

This is Christina E. May's NYU-linked gh account. christina.may@nyulangone.org | mayc06@nyu.edu

Some repositories are still private in advance of manuscript publications (e.g., all code for training and testing ANNs to learn wind direction from high-dimensional neuronal activity data). If you would like to view the code, please send a request via email.

Pinned Loading

  1. AnalyzeWindTunnelDataAnalyzeWindTunnelDataPublic

    Python code to extract and process van Breugel lab wind tunnel behavior data (as in Stupski and van Breugel 2024, Current Biology).

    Jupyter Notebook

  2. ImagingStimuli_Panda3DImagingStimuli_Panda3DPublic

    Stimulus control function for running 2-photon neuronal activity imaging experiments presented in May, Cellini, van Breugel, and Nagel 2025 (bioRxiv).

    Python

  3. pyboundspyboundsPublic

    Forked from vanbreugel-lab/pybounds

    Empirical observability of individual state variables with BOUNDS: Bounding Observability for Uncertain Nonlinear Dynamic Systems.

    Python

  4. FBmodelFBmodelPublic

    MATLAB code to reproduce observed temporal dynamics and sensory stimulus tuning in four neuron populations in the fly Central Complex.

    MATLAB

  5. HotwireAnemometerMeasurementsHotwireAnemometerMeasurementsPublic

    Functions and scripts for measuring windspeed using a hotwire anemometer from Dantec Dynamics.

    Python

  6. PFN_Model_PredictionsPFN_Model_PredictionsPublic

    Notebooks for visualizing PFN model predictions during airflow and optic flow experience.

    Jupyter Notebook