Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

Repository files navigation

pre-processing

automate_analysis.py

This is the main driver script that performs most of the spatial analysis. Input paths should lead to the raw data; outputs will be a series of .pkl files with additional statistics.

Two flags may be set at the beginning of the script:

  • LOG_FILTER uses log-correction when computing statistics
  • MEAN_NORMALIZE subtracts a pixel-wise temporal mean reference image from each image in the stack before computing statistics.

Required inputs:

  • Staunton_maint.gdb (road maintenance data)
  • RITA2_Site1_Staunton_Amplitude_Image_Footprint.shp (SAR footprint)
  • SAR_Amplitude/*.tif (SAR raw and/or despeck images)
  • Raster_Tiles_AOI/*.tif (landcover raster tiles)

change_raster_resolution.py

Helper script for changing the projection/alignment of a .tif file. Used to change 1m Virginia landcover dataset to match the 3m resolution and extent of the SAR data.

Input: Raster to realign (.tif), reference .tif from SAR dataset

Output: Realigned .tif file

gen_sparse.py

Functions for creating sparse matrices for image and road OID datasets.

  • gen_all_roads_array returns a dense boolean mask of pixels where there is a road measurement at any point in the dataset
  • gen_sparse_image creates a single sparse SAR image
  • gen_all_sparse_images creates a sparse SAR image stack as a dictionary
  • gen_sparse_roads creates a single sparse road OID layer
  • gen_all_sparse_roads creates the whole sparse OID stack

pixel2road.py

Handles summary statistics at the pixel level.

Input: DataFrame of pixel level data for all images with one set of OIDs

Output: DataFrame of pixel level data with mean, median, count, standard deviation, minimum, maximum, and "boxplot" min/max

pixelwise.py

Creates the SAR image stack from the sparse matrices to prepare for pixelwise statistics (see pixel2road.py) The output DataFrame has the row and column identifying the pixel location in the raster, any corresponding OIDs from all the OID datasets, and the pixel's amplitude value for each image in the stack.

Input: Sparse matrices (.npz) for SAR images and road OIDs

Output: DataFrame representing the image stack

road_stats.py

Handles data cleaning and aggregation at the road level. Removes outliers and null values, zero amplitude values, and invalid date ranges; adds road-level statistics and finds the closest SAR acquisition date for each IRI measurements; joins road quality data and amplitude data

vector2raster.py

Converts a .shp file to a .tif raster using the extent/resolution of a reference .tif

Input: .shp file to be rasterized; reference .tif file for the region

Output: .tif rasterized version

About

No description, website, or topics provided.

Resources

Stars

0 stars

Watchers

4 watching

Forks

Releases

Packages

Contributors

Languages