GEOPY-2731: Replace InputFile for BaseUIJson class

[domfournier]

GEOPY-2731 - Replace InputFile for BaseUIJson class

[Copilot]

Pull request overview

This PR updates surface-app drivers to use geoapps_utils.base.Driver directly (removing the custom BaseSurfaceDriver/InputFile pathway) as part of the UIJson-related refactor, and refreshes dependency pins/locks accordingly.

Changes:

• Switch iso_surfaces and surface_normals drivers to inherit from geoapps_utils.base.Driver and align behavior with the new base driver pattern (e.g., returning created objects).
• Remove surface_apps/driver.py (BaseSurfaceDriver) and associated InputFile handling.
• Update geoh5py / geoapps-utils git refs in pyproject.toml and regenerate conda-lock files.

Reviewed changes

Copilot reviewed 16 out of 18 changed files in this pull request and generated 2 comments.

Show a summary per file

File	Description
surface_apps/surface_normals/driver.py	Migrates to geoapps_utils.base.Driver and returns generated Points outputs.
surface_apps/iso_surfaces/driver.py	Migrates to geoapps_utils.base.Driver and refactors the main execution method (now run).
surface_apps/driver.py	Removes the custom BaseSurfaceDriver abstraction and InputFile-based parameter building.
pyproject.toml	Updates geoh5py and geoapps-utils git refs to the UIJson feature branch.
environments/py-3.13-win-64.conda.lock.yml	Regenerated lockfile reflecting updated dependency resolution.
environments/py-3.13-win-64-dev.conda.lock.yml	Regenerated dev lockfile reflecting updated dependency resolution.
environments/py-3.13-linux-64.conda.lock.yml	Regenerated lockfile reflecting updated dependency resolution.
environments/py-3.13-linux-64-dev.conda.lock.yml	Regenerated dev lockfile reflecting updated dependency resolution.
environments/py-3.12-win-64.conda.lock.yml	Regenerated lockfile reflecting updated dependency resolution.
environments/py-3.12-win-64-dev.conda.lock.yml	Regenerated dev lockfile reflecting updated dependency resolution.
environments/py-3.12-linux-64.conda.lock.yml	Regenerated lockfile reflecting updated dependency resolution.
environments/py-3.12-linux-64-dev.conda.lock.yml	Regenerated dev lockfile reflecting updated dependency resolution.

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.95%. Comparing base (7e76c08) to head (2279a8c).

Additional details and impacted files

@@ Coverage Diff @@## develop #56 +/- ##
===========================================
+ Coverage 77.40% 84.95% +7.55% 
===========================================
Files 5 5 Lines 239 246 +7 Branches 29 30 +1 ===========================================
+ Hits 185 209 +24 + Misses 44 22 -22 - Partials 10 15 +5 

Files with missing lines	Coverage Δ
surface_apps/iso_surfaces/driver.py	87.17% <100.00%> (+21.39%)	⬆️
surface_apps/iso_surfaces/options.py	82.19% <100.00%> (ø)
surface_apps/surface_normals/driver.py	83.87% <100.00%> (+0.53%)	⬆️
surface_apps/surface_normals/options.py	100.00% <100.00%> (ø)

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[gmcga]

See comments

[gmcga]

• See my comment in iso_surfaces.driver

• I checked the test coverage and noticed the branch coverage in particular seems pretty low for the iso_surfaces driver and options, so I would think it probably makes sense to bolster the unit tests before proceeding/merging.

• I didn't think to look at this before but the docs are also outdated due to some things being removed - there are still references to surface_apps/driver.py which is referenced in api_reference.rst and usage.rst, and surface_apps.iso_surfaces.params referenced in iso_surfaces.rst

[gmcga]

Everything looks good, the only issue now is the ferreus files that seem to have slipped in here