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1. dna-llm/learning-nucleotidesdna-llm/learning-nucleotidesPublic

   A comparison of next-token-prediction-Models for DNA sequences. We provide a new loss function to inform models of DNA 1D-topology.

   Python 4

2. qcGenes_manuscriptqcGenes_manuscriptPublic

   Workflows for correlation of Expression and peaks with file quality, related to our paper "Overlooked poor-quality patient samples in sequencing data impair reproducibility of published clinically …

   Jupyter Notebook

3. salbrec/seqQscorersalbrec/seqQscorerPublic

   Python 23 9

4. OpenBioML/protein-lm-scalingOpenBioML/protein-lm-scalingPublic

   Python 61 12

5. UPOBioinfo/crispromeskapeUPOBioinfo/crispromeskapePublic

   Scripts to analyze the data for the paper "An outstanding bacterial membranome requires CRISPR-Cas systems to avoid the intervention of phages" and derive the figures or subfigures shown in the man…

   Python 1

6. autoTabautoTabPublic

   AutoML for TabData, Workshop poster

   Python 1