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Here we provide snippets of the custom code for the manuscript:

"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"

Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)

1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX

The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials. Scripts provided here use exemplary processed data (folder /data).

The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451

The full metabolome data is available from e!DAL repository under accession number: XXXXX

All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/

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Custom code used in the manuscript:

Resources

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Activity
Custom properties

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2 forks
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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
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kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
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kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Repository files navigation
kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Repository files navigation
kILBIL
Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
About
Custom code used in the manuscript: 
Resources
Readme
Activity
Custom properties
Stars
2 stars
Watchers
2 watching
Forks
2 forks
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
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Here we provide snippets of the custom code for the manuscript:
"Analysis of Wild Tomato Introgression Lines Elucidates the Genetic Basis of Transcriptome and Metabolome Variation Underlying Fruit Traits and Pathogen Response"
Jędrzej Szymański(1,2*+), Samuel Bocobza(1,3*), Sayantan Panda(1,4*), Prashant Sonawane(1), Pablo D. Cárdenas(5), Justin Lashbrooke(6), Avinash Kamble(7), Nir Shahaf(1), Sagit Meir(1), Arnaud Bovy(8), Jules Beekwilder(9), Yury Tikunov(8), Irene Romero de la Fuente(8,10), Dani Zamir(11), Ilana Rogachev(1) and Asaph Aharoni(1+)
1. Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, Israel
2. Current address: Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
3. Current address: Institute of Plant Sciences, Agricultural Research Organization, Institute of Plant Sciences, Rishon LeTzion, Israel
4. Gilat Research Center, Agricultural Research Organization, Mobile Post Negev, 85280 Israel
5. Department of Plant and Environmental Sciences, University of Copenhagen, Denmark
6. Institute for Wine Biotechnology, Faculty of Agrisciences, Stellenbosch University, South Africa
7. Savirtibai Phule Pune University, Department of Botany, Pune, India
8. Wageningen Plant Research, Department of Plant Breeding, Wageningen, Netherlands
9. Wageningen Plant Research, BU Bioscience, Wageningen, Netherlands
10. Current address: Institute of Food Science, Technology and Nutrition, Madrid, Spain
11. Faculty of Agriculture, The Hebrew University of Jerusalem, Rehovot, Israel

published in: Nature Genetics vol XXX
The full methods description is provided in the Methods section of the manuscript and the Supplemental Materials.
Scripts provided here use exemplary processed data (folder /data).
The full transcriptome data is available publicly from a GEO repository under accession number: GSE151451
The full metabolome data is available from e!DAL repository under accession number: XXXXX
All results of the study can be browsed interactively in a dedicated online "kILBIL" browser: https://szymanskilab.shinyapps.io/kilbil/
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