NLM Division of Intramural Research

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1. TPMCalculator TPMCalculatorPublic

   TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files

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2. vadr vadrPublic

   Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

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3. BAMscale BAMscalePublic

   BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.

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4. NSForest NSForestPublic

   A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing

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5. pm4ngs pm4ngsPublic

   Project Manager for NGS data analysis

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6. cwl-ngs-workflows-cbb cwl-ngs-workflows-cbbPublic

   A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

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