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Merge cinnabar-absolute and cinnabar RBFE plotting docs

Status: Open.

#313In OpenFreeEnergy/ExampleNotebooks;

· jthorton opened on Jun 15, 2026

add headers to notebooks

Status: Open.

#292In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Feb 11, 2026

update Create an Alchemical Network notebook to not use to_rbfe_alchemical_network

Status: Open.

#290In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Feb 6, 2026

turn off md sim running in example notebook

Status: Open.

#288In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Feb 6, 2026

do we still want a colab link on PRs now what we have ReviewNB?

Status: Open.

#279In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Dec 11, 2025

fix all warnings shown in example notebooks

Status: Open.

#277In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Dec 10, 2025

Change RBFE example notebooks to use KartografAtomMapper?

Status: Open.

#250In OpenFreeEnergy/ExampleNotebooks;

· hannahbaumann opened on Oct 24, 2025

pin google colab runtime

Status: Open.

#241In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Oct 21, 2025

add a How to change water model notebook

Status: Open.

#189In OpenFreeEnergy/ExampleNotebooks;

· jthorton opened on Feb 11, 2025

Change mapping defaults to allow for element changes

Status: Open.

#184In OpenFreeEnergy/ExampleNotebooks;

· IAlibay opened on Dec 18, 2024

add solvation details to showcase notebook

Status: Open.

#183In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Dec 4, 2024

User Guide review: execution

Status: Open.

#178In OpenFreeEnergy/ExampleNotebooks;

· atravitz opened on Nov 7, 2024