opensilexClientToolsPython

No description provided (generated by Swagger Codegen https://github.com/swagger-api/swagger-codegen)

This Python package is automatically generated by the Swagger Codegen project:

• API version: 1.5.2
• Package version: 1.5.2
• Build package: io.swagger.codegen.languages.PythonClientCodegen

Requirements.

Python 2.7 and 3.4+

Installation & Usage

pip install

If the python package is hosted on Github, you can install directly from Github

pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.5.2

(you may need to run pip with root permission: sudo pip install git+https://github.com/OpenSILEX/opensilexClientToolsPython.git@1.5.2)

Then import the package:

importopensilexClientToolsPython

Setuptools

Install via Setuptools.

python setup.py install --user

(or sudo python setup.py install to install the package for all users)

Then import the package:

importopensilexClientToolsPython

Getting Started

Please follow the installation procedure and then run the following:

importopensilexClientToolsPythonfrompprintimportpprint# usage of a created instance of the API classpythonClient=opensilexClientToolsPython.ApiClient() # TO have more detail on the execution of the requests you can pass verbose=True# Don't forget to change the host to your instance and use a password # and identifier from an account that exists on said instancepythonClient.connect_to_opensilex_ws(
identifier="guest@opensilex.org",
password="guest",
host="http://opensilex.org/sandbox/rest"
)
anotation_api_instance=opensilexClientToolsPython.AnnotationsApi(pythonClient)
target="http://www.opensilex.org/demo/2018/o18000076"# str | Target URI (optional)try:
# Count annotationsapi_response=anotation_api_instance.count_annotations(target=target)
pprint(api_response)
exceptopensilexClientToolsPython.rest.ApiExceptionase:
print("Api Exception when calling AnnotationsApi->count_annotations: %s\n"%e)
# Other more specific exceptions inherit from this general class :# - ApiDuplicateException for duplicated data on POST# - ApiURIExistsException for URI already exists on POST# - ApiURINotFoundException for URI not found on GET# These can be found in rest.pyexceptExceptionase:
print("Exception when calling AnnotationsApi->count_annotations: %s\n"%e)

Documentation for API Endpoints

All URIs are relative to **

Class	Method	HTTP request	Description
AgroportalAPIApi	get_agroportal_ontologies	GET /core/agroportal/ontologies	Get ontologies from agroportal
AgroportalAPIApi	ping_agroportal	GET /core/agroportal/ping	Ping agroportal server
AgroportalAPIApi	search_through_agroportal	GET /core/agroportal/search	Search through agroportal
AnnotationsApi	count_annotations	GET /core/annotations/count	Count annotations
AnnotationsApi	create_annotation	POST /core/annotations	Create an annotation
AnnotationsApi	delete_annotation	DELETE /core/annotations/{uri}	Delete an annotation
AnnotationsApi	get_annotation	GET /core/annotations/{uri}	Get an annotation
AnnotationsApi	search_annotations	GET /core/annotations	Search annotations
AnnotationsApi	search_motivations	GET /core/annotations/motivations	Search motivations
AnnotationsApi	update_annotation	PUT /core/annotations	Update an annotation
AreaApi	create_area	POST /core/area	Add an area
AreaApi	delete_area	DELETE /core/area/{uri}	Delete an area
AreaApi	export_geospatial	POST /core/area/export_geospatial	Export a given list of areas URIs to shapefile
AreaApi	get_by_uri	GET /core/area/{uri}	Get an area
AreaApi	search_intersects	POST /core/area/intersects	Get area whose geometry corresponds to the Intersections
AreaApi	update_area	PUT /core/area	Update an area
AuthenticationApi	authenticate	POST /security/authenticate	Authenticate a user and return an access token
AuthenticationApi	authenticate_open_id	GET /security/openid	Authenticate a user and return an access token
AuthenticationApi	authenticate_saml	GET /security/saml	Authenticate a user and return an access token from SAML response
AuthenticationApi	forgot_password	POST /security/forgot-password	Send an e-mail confirmation
AuthenticationApi	get_credentials_groups	GET /security/credentials	Get list of existing credentials indexed by Swagger @API concepts in the application
AuthenticationApi	logout	DELETE /security/logout	Logout by discarding a user token
AuthenticationApi	renew_password	PUT /security/renew-password	Update user password
AuthenticationApi	renew_token	PUT /security/renew-token	Send back a new token if the provided one is still valid
BRAPIApi	get_calls	GET /brapi/v1/calls	Check the available BrAPI calls
BRAPIApi	get_germplasm_by_search	GET /brapi/v1/germplasm	Submit a search request for germplasm (type accession in OpenSILEX
BRAPIApi	get_observation_units	GET /brapi/v1/studies/{studyDbId}/observationunits	List all the observation units measured in the study.
BRAPIApi	get_observation_variables	GET /brapi/v1/studies/{studyDbId}/observationvariables	List all the observation variables measured in the study.
BRAPIApi	get_observations	GET /brapi/v1/studies/{studyDbId}/observations	Get the observations associated to a specific study
BRAPIApi	get_studies	GET /brapi/v1/studies	Retrieve studies information
BRAPIApi	get_studies_search	GET /brapi/v1/studies-search	Retrieve studies information
BRAPIApi	get_study_details	GET /brapi/v1/studies/{studyDbId}	Retrieve study details
BRAPIApi	get_variable_details	GET /brapi/v1/variables/{observationVariableDbId}	Retrieve variable details by id
BRAPIApi	get_variables_list	GET /brapi/v1/variables	BrAPIv1CallDTO to retrieve a list of observationVariables available in the system
DataApi	add_list_data	POST /core/data	Add data
DataApi	count_data	POST /core/data/count	Count data
DataApi	count_datafiles	GET /core/datafiles/count	Count datafiles
DataApi	create_provenance	POST /core/provenances	Add a provenance
DataApi	delete_batch_history_by_uri	DELETE /core/data/batch_history/{uri}	Delete batch history by URI
DataApi	delete_data	DELETE /core/data/{uri}	Delete data
DataApi	delete_data_on_search	DELETE /core/data	Delete data on criteria
DataApi	delete_datafile	DELETE /core/datafiles/{uri}	Delete a datafile
DataApi	delete_provenance	DELETE /core/provenances/{uri}	Delete a provenance that doesn't describe data
DataApi	export_data	GET /core/data/export	Export data
DataApi	export_data1	POST /core/data/export	Export data
DataApi	export_spectra_files	POST /core/datafiles/export-spectra-files
DataApi	get_batch_history	GET /core/data/batch_history/{uri}	Get batch
DataApi	get_data	GET /core/data/{uri}	Get data
DataApi	get_data_file	GET /core/datafiles/{uri}	Get a data file
DataApi	get_data_file_description	GET /core/datafiles/{uri}/description	Get a data file description
DataApi	get_data_file_descriptions_by_search	GET /core/datafiles	Search data files
DataApi	get_data_file_descriptions_by_targets	POST /core/datafiles/by_targets	Search data files for a large list of targets
DataApi	get_data_list_by_targets	POST /core/data/by_targets	Search data for a large list of targets
DataApi	get_data_series_by_facility	GET /core/data/data_serie/facility	Get all data series associated with a facility
DataApi	get_datafile_path	GET /core/datafiles/{uri}/path	Get a datafile path
DataApi	get_datafiles_provenances	GET /core/datafiles/provenances	Search provenances linked to datafiles
DataApi	get_datafiles_provenances_by_targets	POST /core/datafiles/provenances/by_targets	Search provenances linked to datafiles for a large list of targets
DataApi	get_mathematical_operators	GET /core/data/mathematicalOperators	Get mathematical operators
DataApi	get_pictures_thumbnails	GET /core/datafiles/{uri}/thumbnail	Get a picture thumbnail
DataApi	get_provenance	GET /core/provenances/{uri}	Get a provenance
DataApi	get_provenances_by_uris	GET /core/provenances/by_uris	Get a list of provenances by their URIs
DataApi	get_used_provenances	GET /core/data/provenances	Search provenances linked to data
DataApi	get_used_provenances_by_targets	POST /core/data/provenances/by_targets	Search provenances linked to data for a large list of targets
DataApi	get_used_variables	GET /core/data/variables	Get variables linked to data
DataApi	import_csv_data	POST /core/data/import	Import a CSV file for the given provenanceURI
DataApi	post_data_file	POST /core/datafiles	Add a data file
DataApi	post_data_file_paths	POST /core/datafiles/description	Describe datafiles and give their relative paths in the configured storage system. In the case of already stored datafiles.
DataApi	search_batch_history	GET /core/data/batch_history	Search data batch history
DataApi	search_data_list	GET /core/data	Search data
DataApi	search_data_list_by_targets	POST /core/data/search	Search data for a large list of targets
DataApi	search_provenance	GET /core/provenances	Get provenances
DataApi	search_provenances_by_uris	POST /core/provenances/by_uris	Get a list of provenances by their URIs
DataApi	update	PUT /core/data	Update data
DataApi	update_confidence	PUT /core/data/{uri}/confidence	Update confidence index
DataApi	update_provenance	PUT /core/provenances	Update a provenance
DataApi	upload_and_parse_dx	POST /core/datafiles/upload-dx	Upload and parse DX file
DataApi	upload_and_parse_spectra_csv	POST /core/datafiles/upload-spectra-csv	Upload and parse spectra CSV file
DataApi	validate_csv	POST /core/data/import_validation	Import a CSV file for the given provenanceURI.
DevicesApi	count_device_data	GET /core/devices/{uri}/data/count	Count device data
DevicesApi	create_device	POST /core/devices	Create a device
DevicesApi	delete_device	DELETE /core/devices/{uri}	Delete a device
DevicesApi	export_devices	GET /core/devices/export	export devices
DevicesApi	export_geospatial1	POST /core/devices/export_geospatial	Export a given list of devices URIs to shapefile
DevicesApi	export_list	POST /core/devices/export_by_uris	export devices
DevicesApi	get_device	GET /core/devices/{uri}	Get device detail
DevicesApi	get_device_by_uris	GET /core/devices/by_uris	Get devices by uris
DevicesApi	get_device_data_files_provenances	GET /core/devices/{uri}/datafiles/provenances	Get provenances of datafiles linked to this device
DevicesApi	get_device_data_provenances	GET /core/devices/{uri}/data/provenances	Get provenances of data that have been measured on this device
DevicesApi	get_device_variables	GET /core/devices/{uri}/variables	Get variables linked to the device
DevicesApi	get_devices_by_facility	GET /core/devices/{uri}/facility	Get devices by facility
DevicesApi	import_csv	POST /core/devices/import	Import a CSV file with one device per line
DevicesApi	search_device_data	GET /core/devices/{uri}/data	Search device data
DevicesApi	search_device_datafiles	GET /core/devices/{uri}/datafiles	Search device datafiles descriptions
DevicesApi	search_devices	GET /core/devices	Search devices
DevicesApi	search_devices_by_uris	POST /core/devices/by_uris	Get devices by uris
DevicesApi	update_device	PUT /core/devices	Update a device
DevicesApi	validate_csv1	POST /core/devices/import_validation	Validate the import of a CSV file with one device per line
DocumentsApi	count_documents	GET /core/documents/count	Count documents
DocumentsApi	create_document	POST /core/documents	Add a document
DocumentsApi	delete_document	DELETE /core/documents/{uri}	Delete a document
DocumentsApi	get_document_file	GET /core/documents/{uri}	Get document
DocumentsApi	get_document_metadata	GET /core/documents/{uri}/description	Get document's description
DocumentsApi	search_documents	GET /core/documents	Search documents
DocumentsApi	update_document	PUT /core/documents	Update document's description
EventsApi	count_events	GET /core/events/count	Count events
EventsApi	create_events	POST /core/events	Create a list of event
EventsApi	create_moves	POST /core/events/moves	Create a list of move event
EventsApi	delete_event	DELETE /core/events/{uri}	Delete an event
EventsApi	delete_move_event	DELETE /core/events/moves/{uri}	Delete a move event
EventsApi	get_event	GET /core/events/{uri}	Get an event
EventsApi	get_event_details	GET /core/events/{uri}/details	Get an event with all it's properties
EventsApi	get_move_event	GET /core/events/moves/{uri}	Get a move with all it's properties
EventsApi	get_move_event_by_uris	GET /core/events/moves/by_uris	Get a list of moves with all positional information
EventsApi	import_event_csv	POST /core/events/import	Import a CSV file with one move and one target per line
EventsApi	import_move_csv	POST /core/events/moves/import	Import a CSV file with one move and one target per line
EventsApi	search_events	GET /core/events	Search events
EventsApi	search_move_event_by_uris	POST /core/events/moves/by_uris	Get a list of moves with all positional information
EventsApi	update_event	PUT /core/events	Update an event
EventsApi	update_move_event	PUT /core/events/moves	Update a move event
EventsApi	validate_event_csv	POST /core/events/import_validation	Check a CSV file with one move and one target per line
EventsApi	validate_move_csv	POST /core/events/moves/import_validation	Check a CSV file with one move and one target per line
ExperimentsApi	create_experiment	POST /core/experiments	Add an experiment
ExperimentsApi	delete_experiment	DELETE /core/experiments/{uri}	Delete an experiment
ExperimentsApi	export_experiment_data_list	GET /core/experiments/{uri}/data/export	export experiment data
ExperimentsApi	get_available_facilities	GET /core/experiments/{uri}/available_facilities	Get facilities available for an experiment
ExperimentsApi	get_available_factors	GET /core/experiments/{uri}/factors	Get factors with their levels associated to an experiment
ExperimentsApi	get_available_species	GET /core/experiments/{uri}/species	Get species present in an experiment
ExperimentsApi	get_experiment	GET /core/experiments/{uri}	Get an experiment
ExperimentsApi	get_experiments_by_uris	GET /core/experiments/by_uris	Get experiments URIs
ExperimentsApi	get_used_variables1	GET /core/experiments/{uri}/variables	Get variables involved in an experiment
ExperimentsApi	import_csv_data1	POST /core/experiments/{uri}/data/import	Import a CSV file for the given experiment URI and scientific object type.
ExperimentsApi	search_experiment_data_list	GET /core/experiments/{uri}/data	Search data
ExperimentsApi	search_experiment_provenances	GET /core/experiments/{uri}/provenances	Get provenances involved in an experiment
ExperimentsApi	search_experiments	GET /core/experiments	Search experiments
ExperimentsApi	search_experiments_by_uris	POST /core/experiments/by_uris	Get experiments URIs
ExperimentsApi	search_funding	GET /core/experiments/funding	Search funding
ExperimentsApi	update_experiment	PUT /core/experiments	Update an experiment
ExperimentsApi	validate_csv2	POST /core/experiments/{uri}/data/import_validation	Import a CSV file for the given experiment URI and scientific object type.
FactorsApi	count_factors	GET /core/experiments/factors/count	Count factors
FactorsApi	create_factor	POST /core/experiments/factors	Create a factor
FactorsApi	delete_factor	DELETE /core/experiments/factors/{uri}	Delete a factor
FactorsApi	delete_factor_level	DELETE /core/experiments/factors/levels/{uri}	Delete a factor level
FactorsApi	get_factor_associated_experiments	GET /core/experiments/factors/{uri}/experiments	Get factor associated experiments
FactorsApi	get_factor_by_uri	GET /core/experiments/factors/{uri}	Get a factor
FactorsApi	get_factor_level	GET /core/experiments/factors/levels/{uri}	Get a factor level
FactorsApi	get_factor_level_detail	GET /core/experiments/factors/levels/{uri}/details	Get a factor level
FactorsApi	get_factor_levels	GET /core/experiments/factors/{uri}/levels	Get factor levels
FactorsApi	get_factors_by_uris	GET /core/experiments/factors/by_uris	Get a list of factors by their URIs
FactorsApi	search_categories	GET /core/experiments/factors/categories	Search categories
FactorsApi	search_factor_levels	GET /core/experiments/factors/factor_levels	Search factors levels
FactorsApi	search_factors	GET /core/experiments/factors	Search factors
FactorsApi	search_factors_by_uris	POST /core/experiments/factors/by_uris	Get a list of factors by their URIs
FactorsApi	update_factor	PUT /core/experiments/factors	Update a factor
FaidareApi	get_calls1	GET /faidare/v1/calls	Check the available faidare calls
FaidareApi	get_germplasms_by_search	GET /faidare/v1/germplasm	Submit a search request for germplasm
FaidareApi	get_locations_list	GET /faidare/v1/locations	Faidarev1CallDTO to retrieve a list of locations available in the system
FaidareApi	get_studies_list	GET /faidare/v1/studies	Retrieve studies information
FaidareApi	get_trials_list	GET /faidare/v1/trials	Faidarev1CallDTO to retrieve a list of trials available in the system
FaidareApi	get_variables_list1	GET /faidare/v1/variables	Faidarev1CallDTO to retrieve a list of observationVariables available in the system
GermplasmApi	check_germplasms_exist	POST /core/germplasm/check	check germplasms exist
GermplasmApi	create_germplasm	POST /core/germplasm	Add a germplasm
GermplasmApi	create_germplasm_group	POST /core/germplasm_group	Add a germplasm group
GermplasmApi	delete_germplasm	DELETE /core/germplasm/{uri}	Delete a germplasm
GermplasmApi	delete_germplasm_group	DELETE /core/germplasm_group/{uri}	Delete a germplasm group
GermplasmApi	export_germplasm	POST /core/germplasm/export	export germplasm
GermplasmApi	get_germplasm	GET /core/germplasm/{uri}	Get a germplasm
GermplasmApi	get_germplasm_attribute_values	GET /core/germplasm/attributes/{attribute}	Get attribute values of all germplasm for a given attribute
GermplasmApi	get_germplasm_attributes	GET /core/germplasm/attributes	Get attributes of all germplasm
GermplasmApi	get_germplasm_experiments	GET /core/germplasm/{uri}/experiments	Get experiments where a germplasm has been used
GermplasmApi	get_germplasm_group	GET /core/germplasm_group/{uri}	Get a germplasm group
GermplasmApi	get_germplasm_group_by_uris	GET /core/germplasm_group/by-uris	Get germplasm groups by their URIs
GermplasmApi	get_germplasm_group_content	GET /core/germplasm_group/{uri}/germplasm	Get a germplasm group's germplasm, paginated
GermplasmApi	get_germplasm_group_with_germplasms	GET /core/germplasm_group/with-germplasm/{uri}	Get a germplasm group with nested germplasm details
GermplasmApi	search_germplasm	GET /core/germplasm	Search germplasm
GermplasmApi	search_germplasm_group_by_uris	POST /core/germplasm_group/by_uris	Get germplasm groups by their URIs
GermplasmApi	search_germplasm_groups	POST /core/germplasm_group/search	Search germplasm groups
GermplasmApi	search_germplasms_by_uris	POST /core/germplasm/by_uris	Get a list of germplasms by their URIs
GermplasmApi	update_germplasm	PUT /core/germplasm	Update a germplasm
GermplasmApi	update_germplasm_group	PUT /core/germplasm_group	Update a germplasm group
GermplasmApi	upsert_germplasms	POST /core/germplasm/import	Add or update many germplasms
LocationsApi	count_locations	GET /core/locations/count	Count locations
LocationsApi	search_location_history	GET /core/locations/history	Search location history of an object
LocationsApi	search_target_locations	POST /core/locations/targetLocations	Search the last geospatialized location of a target
MetricsApi	get_experiment_summary_history	GET /core/metrics/experiment/{uri}	Get an experiment summary history
MetricsApi	get_running_experiments_summary	GET /core/metrics/running_experiments	Get running experiments metrics
MetricsApi	get_system_metrics	GET /core/metrics/system	Get system metrics
MetricsApi	get_system_metrics_summary	GET /core/metrics/system/summary	Get system metrics summary
OntologyApi	add_class_property_restriction	POST /ontology/rdf_type_property_restriction	Add a rdf type property restriction
OntologyApi	check_uris_types	POST /ontology/check_rdf_types	Check the given rdf-types on the given uris
OntologyApi	create_property	POST /ontology/property	Create a RDF property
OntologyApi	delete_class_property_restriction	DELETE /ontology/rdf_type_property_restriction	Delete a rdf type property restriction
OntologyApi	delete_property	DELETE /ontology/property	Delete a property
OntologyApi	get_base_uri	GET /ontology/base_uri	Return base uri
OntologyApi	get_classes	GET /ontology/rdf_types	Return classes models definitions with properties for a list of rdf types
OntologyApi	get_data_properties	GET /ontology/data_properties	Search data properties tree
OntologyApi	get_linkable_properties	GET /ontology/linkable_properties	Search properties linkable to a domain
OntologyApi	get_name_space	GET /ontology/name_space	Return namespaces
OntologyApi	get_object_properties	GET /ontology/object_properties	Search object properties tree
OntologyApi	get_properties	GET /ontology/properties/{domain}	Search properties tree
OntologyApi	get_properties_by_domain_hierarchy_using_restrictions	GET /ontology/domain_hierarchy_restrictions	Get restrictions from some super-class domain to one lower down in the hierarchy, ordered by what domain they first appear in.
OntologyApi	get_property	GET /ontology/property	Return property model definition detail
OntologyApi	get_rdf_type	GET /ontology/rdf_type	Return class model definition with properties
OntologyApi	get_shared_resource_instances	GET /ontology/shared_resource_instances	Return the list of shared resource instances
OntologyApi	get_sub_classes_of	GET /ontology/subclasses_of	Search sub-classes tree of an RDF class
OntologyApi	get_sub_properties_of	GET /ontology/subproperties_of	Return property list from a parent property
OntologyApi	get_uri_label	GET /ontology/uri_label	Return associated rdfs:label of an uri if exists
OntologyApi	get_uri_labels_list	POST /ontology/uris_labels	Return associated rdfs:label of uris if they exist
OntologyApi	get_uri_types	POST /ontology/uri_types	Return all rdf types of some URIS
OntologyApi	rename_uri	PUT /ontology/{uri}/rename	Rename all occurrences of the given URI
OntologyApi	search_sub_classes_of	GET /ontology/subclasses_of/search	Search sub-classes tree of an RDF class
OntologyApi	update_class_property_restriction	PUT /ontology/rdf_type_property_restriction	Update a rdf type property restriction
OntologyApi	update_property	PUT /ontology/property	Update a RDF property
OrganizationsApi	create_facility	POST /core/facilities	Create a facility
OrganizationsApi	create_organization	POST /core/organisations	Create an organisation
OrganizationsApi	create_site	POST /core/sites	Create a site
OrganizationsApi	delete_facility	DELETE /core/facilities/{uri}	Delete a facility
OrganizationsApi	delete_organization	DELETE /core/organisations/{uri}	Delete an organisation
OrganizationsApi	delete_site	DELETE /core/sites/{uri}	Delete a site
OrganizationsApi	get_all_facilities	GET /core/facilities/all_facilities	Get all facilities
OrganizationsApi	get_facilities_by_uri	GET /core/facilities/by_uris	Get facilities by their URIs
OrganizationsApi	get_facilities_with_geometry	GET /core/facilities/with_location	Get only a list of facilities with a position (address/spatial coordinates
OrganizationsApi	get_facility	GET /core/facilities/{uri}	Get a facility
OrganizationsApi	get_organization	GET /core/organisations/{uri}	Get an organisation
OrganizationsApi	get_site	GET /core/sites/{uri}	Get a site
OrganizationsApi	get_sites_by_uri	GET /core/sites/by_uris	Get a list of sites
OrganizationsApi	get_sites_with_location	GET /core/sites/with_location	Get only the list of sites with a location
OrganizationsApi	minimal_search_facilities	GET /core/facilities/minimal_search	Search facilities returning minimal embedded information for better performance
OrganizationsApi	search_facilities	GET /core/facilities	Search facilities
OrganizationsApi	search_facilities_by_uris	POST /core/facilities/by_uris	Get facilities by their URIs
OrganizationsApi	search_organizations	GET /core/organisations	Search organisations
OrganizationsApi	search_sites	GET /core/sites	Search all sites
OrganizationsApi	update_facility	PUT /core/facilities	Update a facility
OrganizationsApi	update_organization	PUT /core/organisations	Update an organisation
OrganizationsApi	update_site	PUT /core/sites	Update a site
PositionsApi	count_moves	GET /core/positions/count	Count moves
PositionsApi	get_position	GET /core/positions/{uri}	Get the position of an object
PositionsApi	search_geospatialized_position	POST /core/positions/geospatializedPosition	Search the last geospatialized position of a target for an experiment
PositionsApi	search_position_history	GET /core/positions/history	Search history of position of an object
ProjectsApi	create_project	POST /core/projects	Add a project
ProjectsApi	delete_project	DELETE /core/projects/{uri}	Delete a project
ProjectsApi	get_project	GET /core/projects/{uri}	Get a project
ProjectsApi	get_projects_by_uri	GET /core/projects/by_uris	Get projects by their URIs
ProjectsApi	search_projects	GET /core/projects	Search projects
ProjectsApi	search_projects_by_uris	POST /core/projects/by_uris	Get projects by their URIs
ProjectsApi	update_project	PUT /core/projects	Update a project
ScientificObjectsApi	count_scientific_objects	GET /core/scientific_objects/count	Count scientific objects
ScientificObjectsApi	create_scientific_object	POST /core/scientific_objects	Create a scientific object for the given experiment
ScientificObjectsApi	delete_scientific_object	DELETE /core/scientific_objects/{uri}	Delete a scientific object
ScientificObjectsApi	export_csv	POST /core/scientific_objects/export	Export a given list of scientific object URIs to csv data file
ScientificObjectsApi	export_geospatial2	POST /core/scientific_objects/export_geospatial	Export a given list of scientific object URIs to shapefile or geojson
ScientificObjectsApi	get_scientific_object_data_files_provenances	GET /core/scientific_objects/{uri}/datafiles/provenances	Get provenances of datafiles linked to this scientific object
ScientificObjectsApi	get_scientific_object_data_provenances	GET /core/scientific_objects/{uri}/data/provenances	Get provenances of data that have been measured on this scientific object
ScientificObjectsApi	get_scientific_object_detail	GET /core/scientific_objects/{uri}	Get scientific object detail
ScientificObjectsApi	get_scientific_object_detail_by_experiments	GET /core/scientific_objects/{uri}/experiments	Get scientific object detail for each experiments, a null value for experiment in response means a properties defined outside of any experiment (shared object).
ScientificObjectsApi	get_scientific_object_variables	GET /core/scientific_objects/{uri}/variables	Get variables measured on this scientific object
ScientificObjectsApi	get_scientific_objects_children	GET /core/scientific_objects/children	Get list of scientific object children
ScientificObjectsApi	get_used_types	GET /core/scientific_objects/used_types	get used scientific object types
ScientificObjectsApi	import_csv1	POST /core/scientific_objects/import	Import a CSV file for the given experiment URI and scientific object type.
ScientificObjectsApi	search_scientific_objects	GET /core/scientific_objects	Search list of scientific objects
ScientificObjectsApi	search_scientific_objects_list_by_uris	POST /core/scientific_objects/by_uris	Get scientific objet list of a given experiment URI
ScientificObjectsApi	search_scientific_objects_with_geometry_list_by_uris	GET /core/scientific_objects/geometry	Get scientific objet list with geometry of a given experiment URI
ScientificObjectsApi	update_scientific_object	PUT /core/scientific_objects	Update a scientific object for the given experiment
ScientificObjectsApi	validate_csv3	POST /core/scientific_objects/import_validation	Validate a CSV file for the given experiment URI and scientific object type.
SecurityApi	add_favorite	POST /security/accounts/favorites	Add a favorite
SecurityApi	add_favorite1	POST /security/users/favorites	Add a favorite
SecurityApi	create_account	POST /security/accounts	Add an account
SecurityApi	create_group	POST /security/groups	Add a group
SecurityApi	create_person	POST /security/persons	Add a person
SecurityApi	create_profile	POST /security/profiles	Add a profile
SecurityApi	create_user	POST /security/users	Add a user
SecurityApi	delete_account	DELETE /security/accounts/{accountURI}	Delete an account
SecurityApi	delete_favorite	DELETE /security/accounts/favorites/{uriFavorite}	Delete a favorite
SecurityApi	delete_favorite1	DELETE /security/users/favorites/{uriFavorite}	Delete a favorite
SecurityApi	delete_group	DELETE /security/groups/{uri}	Delete a group
SecurityApi	delete_profile	DELETE /security/profiles/{uri}	Delete a profile
SecurityApi	get_account	GET /security/accounts/{uri}	Get an account
SecurityApi	get_accounts_by_uri	GET /security/accounts/by_uris	Get accounts by their URIs
SecurityApi	get_all_profiles	GET /security/profiles/all	Get all profiles
SecurityApi	get_favorites	GET /security/accounts/favorites	Get list of favorites for a user
SecurityApi	get_favorites1	GET /security/users/favorites	Get list of favorites for a user
SecurityApi	get_gdpr_file	GET /security/persons/GDPR	Get RGPD PDF
SecurityApi	get_group	GET /security/groups/{uri}	Get a group
SecurityApi	get_groups_by_uri	GET /security/groups/by_uris	Get groups by their URIs
SecurityApi	get_orcid_record	GET /security/persons/orcid_record	Get infos from an ORCID
SecurityApi	get_person	GET /security/persons/{uri}	Get a Person
SecurityApi	get_persons_by_uri	GET /security/persons/by_uris	Get persons by their URIs
SecurityApi	get_profile	GET /security/profiles/{uri}	Get a profile
SecurityApi	get_user	GET /security/users/{uri}	Get a user
SecurityApi	get_user_groups	GET /security/accounts/{uri}/groups	Get groups of a user
SecurityApi	get_user_groups1	GET /security/users/{uri}/groups	Get groups of a user
SecurityApi	get_users_by_uri	GET /security/users/by_uris	Get users by their URIs
SecurityApi	search_accounts	GET /security/accounts	Search accounts
SecurityApi	search_accounts_by_uris	POST /security/accounts/by_uris	Get accounts by their URIs
SecurityApi	search_groups	GET /security/groups	Search groups
SecurityApi	search_groups_by_uris	POST /security/groups/by_uris	Get groups by their URIs
SecurityApi	search_persons	GET /security/persons	Search persons
SecurityApi	search_persons_by_uris	POST /security/persons/by_uris	Get persons by their URIs
SecurityApi	search_profiles	GET /security/profiles	Search profiles
SecurityApi	search_users	GET /security/users	Search users
SecurityApi	update_account	PUT /security/accounts	Update an account
SecurityApi	update_group	PUT /security/groups	Update a group
SecurityApi	update_person	PUT /security/persons	Update a person
SecurityApi	update_profile	PUT /security/profiles	Update a profile
SecurityApi	update_user	PUT /security/users	Update a user
SpeciesApi	get_all_species	GET /core/species	get species (no pagination)
StapleAPIApi	export_ontology_file	GET /staple/ontology_file	Export ontology file for Staple API as turtle syntax
StapleAPIApi	get_resource_graphs	GET /staple/resource_graph	Get all graphs associated with resources
SystemApi	get_version_info	GET /core/system/info	get system information
UriSearchApi	search_by_uri	GET /core/uri_search/{uri}	Get a list of objects that match the passed URI
VariablesApi	classic_export_variable_by_uris	POST /core/variables/export_classic_by_uris	export variable by list of uris
VariablesApi	copy_from_shared_resource_instance	POST /core/variables/copy_from_shared_resource_instance	Copy the selected variables from the shared resource instance
VariablesApi	create_characteristic	POST /core/characteristics	Add a characteristic
VariablesApi	create_entity	POST /core/entities	Add an entity
VariablesApi	create_interest_entity	POST /core/entities_of_interest	Add an entity of interest
VariablesApi	create_method	POST /core/methods	Add a method
VariablesApi	create_unit	POST /core/units	Add an unit
VariablesApi	create_variable	POST /core/variables	Add a variable
VariablesApi	create_variables_group	POST /core/variables_group	Add a variables group
VariablesApi	delete_characteristic	DELETE /core/characteristics/{uri}	Delete a characteristic
VariablesApi	delete_entity	DELETE /core/entities/{uri}	Delete an entity
VariablesApi	delete_interest_entity	DELETE /core/entities_of_interest/{uri}	Delete an entity of interest
VariablesApi	delete_method	DELETE /core/methods/{uri}	Delete a method
VariablesApi	delete_unit	DELETE /core/units/{uri}	Delete an unit
VariablesApi	delete_variable	DELETE /core/variables/{uri}	Delete a variable
VariablesApi	delete_variables_group	DELETE /core/variables_group/{uri}	Delete a variables group
VariablesApi	details_export_variable_by_uris	POST /core/variables/export_details_by_uris	export detailed variable by list of uris
VariablesApi	get_characteristic	GET /core/characteristics/{uri}	Get a characteristic
VariablesApi	get_characteristics_by_uris	GET /core/characteristics/by_uris	Get detailed characteristics by uris
VariablesApi	get_datatypes	GET /core/variables/datatypes	Get variables datatypes
VariablesApi	get_entities_by_uris	GET /core/entities/by_uris	Get detailed entities by uris
VariablesApi	get_entity	GET /core/entities/{uri}	Get an entity
VariablesApi	get_interest_entities_by_uris	GET /core/entities_of_interest/by_uris	Get detailed entities of interest by uris
VariablesApi	get_interest_entity	GET /core/entities_of_interest/{uri}	Get an entity of interest
VariablesApi	get_method	GET /core/methods/{uri}	Get a method
VariablesApi	get_methods_by_uris	GET /core/methods/by_uris	Get detailed methods by uris
VariablesApi	get_unit	GET /core/units/{uri}	Get an unit
VariablesApi	get_units_by_uris	GET /core/units/by_uris	Get detailed units by uris
VariablesApi	get_variable	GET /core/variables/{uri}	Get a variable
VariablesApi	get_variables_by_uris	GET /core/variables/by_uris	Get detailed variables by uris
VariablesApi	get_variables_group	GET /core/variables_group/{uri}	Get a variables group
VariablesApi	get_variables_group_by_uris	GET /core/variables_group/by_uris	Get variables groups by their URIs
VariablesApi	search_characteristics	GET /core/characteristics	Search characteristics by name
VariablesApi	search_characteristics_by_uris	POST /core/characteristics/by_uris	Get detailed characteristics by uris
VariablesApi	search_entities	GET /core/entities	Search entities by name
VariablesApi	search_entities_by_uris	POST /core/entities/by_uris	Get detailed entities by uris
VariablesApi	search_interest_entities_by_uris	POST /core/entities_of_interest/by_uris	Get detailed entities of interest by uris
VariablesApi	search_interest_entity	GET /core/entities_of_interest	Search entities of interest by name
VariablesApi	search_methods	GET /core/methods	Search methods by name
VariablesApi	search_methods_by_uris	POST /core/methods/by_uris	Get detailed methods by uris
VariablesApi	search_units	GET /core/units	Search units by name
VariablesApi	search_units_by_uris	POST /core/units/by_uris	Get detailed units by uris
VariablesApi	search_variables	GET /core/variables	Search variables
VariablesApi	search_variables_by_uris	POST /core/variables/by_uris	Get detailed variables by uris
VariablesApi	search_variables_details	GET /core/variables/details	Search detailed variables by name, long name, entity, characteristic, method or unit name
VariablesApi	search_variables_group_by_uris	POST /core/variables_group/by_uris	Get variables groups by their URIs
VariablesApi	search_variables_groups	GET /core/variables_group	Search variables groups
VariablesApi	update_characteristic	PUT /core/characteristics	Update a characteristic
VariablesApi	update_entity	PUT /core/entities	Update an entity
VariablesApi	update_interest_entity	PUT /core/entities_of_interest	Update an entity of interest
VariablesApi	update_method	PUT /core/methods	Update a method
VariablesApi	update_unit	PUT /core/units	Update an unit
VariablesApi	update_variable	PUT /core/variables	Update a variable
VariablesApi	update_variables_group	PUT /core/variables_group	Update a variables group
VueJsApi	get_config	GET /vuejs/config	Return the current configuration
VueJsApi	get_extension	GET /vuejs/extension/js/{module}.js	Return the front Vue JS extension file to include
VueJsApi	get_extension_style	GET /vuejs/extension/css/{module}.css	Return the front Vue JS extension css file to include
VueJsApi	get_theme_config	GET /vuejs/theme/{moduleId}/{themeId}/config	Return the front Vue JS theme configuration
VueJsApi	get_theme_css	GET /vuejs/theme/{moduleId}/{themeId}/style.css	Return the theme css file
VueJsApi	get_theme_resource	GET /vuejs/theme/{moduleId}/{themeId}/resource	Return the theme requested resource
VueJsApi	get_user_config	GET /vuejs/user_config	Return the user-specific configuration
VueJsOntologyExtensionApi	create_rdf_type	POST /vuejs/owl_extension/rdf_type	Create a custom class
VueJsOntologyExtensionApi	delete_rdf_type	DELETE /vuejs/owl_extension/rdf_type/{uri}	Delete a RDF type
VueJsOntologyExtensionApi	get_data_types1	GET /vuejs/owl_extension/data_types	Return literal datatypes definition
VueJsOntologyExtensionApi	get_object_types	GET /vuejs/owl_extension/object_types	Return object types definition
VueJsOntologyExtensionApi	get_rdf_type1	GET /vuejs/owl_extension/rdf_type	Return rdf type model definition with properties
VueJsOntologyExtensionApi	get_rdf_type_properties	GET /vuejs/owl_extension/rdf_type_properties	Return class model properties definitions
VueJsOntologyExtensionApi	get_rdf_types_parameters	GET /vuejs/owl_extension/rdf_types_parameters	Return RDF types parameters for Vue.js application
VueJsOntologyExtensionApi	set_rdf_type_properties_order	PUT /vuejs/owl_extension/properties_order	Define properties order
VueJsOntologyExtensionApi	update_rdf_type	PUT /vuejs/owl_extension/rdf_type	Update a custom class

Documentation For Models

• AccountCreationDTO
• AccountGetDTO
• AccountModel
• AccountUpdateDTO
• ActivityCreationDTO
• ActivityGetDTO
• AgentModel
• AgroportalLinksModel
• AgroportalOntologiesConfigDTO
• AgroportalTermDTO
• AnnotationCreationDTO
• AnnotationGetDTO
• AnnotationModel
• AnnotationUpdateDTO
• AnonId
• ApiContactInfoDTO
• ApiExternalDocsDTO
• ApiGitCommitDTO
• ApiLicenseInfoDTO
• ApiModulesInfo
• AreaCreationDTO
• AreaGetDTO
• AreaUpdateDTO
• AuthenticationDTO
• BatchHistoryGetDTO
• BrAPIv1CallDTO
• BrAPIv1CallListResponse
• BrAPIv1DocumentationLinkDTO
• BrAPIv1GermplasmDTO
• BrAPIv1GermplasmListResponse
• BrAPIv1MethodDTO
• BrAPIv1ObservationDTO
• BrAPIv1ObservationListResponse
• BrAPIv1ObservationSummaryDTO
• BrAPIv1ObservationUnitDTO
• BrAPIv1ObservationUnitListResponse
• BrAPIv1ObservationUnitTreatmentDTO
• BrAPIv1ObservationUnitXrefDTO
• BrAPIv1ObservationVariableDTO
• BrAPIv1ObservationVariableListResponse
• BrAPIv1OntologyReferenceDTO
• BrAPIv1ScaleDTO
• BrAPIv1SeasonDTO
• BrAPIv1SingleObservationVariableResponse
• BrAPIv1SingleStudyResponse
• BrAPIv1StudyDTO
• BrAPIv1StudyListResponse
• BrAPIv1SuperStudyDTO
• BrAPIv1TraitDTO
• BrapiDataResponsePart
• BrapiDataResponsePartListBrAPIv1CallDTO
• BrapiDataResponsePartListBrAPIv1GermplasmDTO
• BrapiDataResponsePartListBrAPIv1ObservationDTO
• BrapiDataResponsePartListBrAPIv1ObservationUnitDTO
• BrapiDataResponsePartListBrAPIv1ObservationVariableDTO
• BrapiDataResponsePartListBrAPIv1StudyDTO
• BrapiDataResponsePartListFaidarev1CallDTO
• BrapiDataResponsePartListFaidarev1GermplasmDTO
• BrapiDataResponsePartListFaidarev1LocationDTO
• BrapiDataResponsePartListFaidarev1ObservationVariableDTO
• BrapiDataResponsePartListFaidarev1StudyDTO
• BrapiDataResponsePartListFaidarev1TrialDTO
• CSVCell
• CSVDatatypeError
• CSVDuplicateURIError
• CSVURINotFoundError
• CSVValidationDTO
• CSVValidationModel
• Capabilities
• CharacteristicCreationDTO
• CharacteristicDetailsDTO
• CharacteristicGetDTO
• CharacteristicUpdateDTO
• CopyResourceDTO
• CountItemDTO
• CountItemPeriodDTO
• CountListItemDTO
• CountListItemPeriodDTO
• CredentialDTO
• CredentialsGroupDTO
• Crs
• CsvHeader
• DashboardConfigDTO
• DataCSVValidationDTO
• DataCSVValidationModel
• DataComputedGetDTO
• DataConfidenceDTO
• DataCreationDTO
• DataFileGetDTO
• DataFilePathCreationDTO
• DataGetDTO
• DataGetDetailsDTO
• DataGetSearchDTO
• DataProvenanceModel
• DataSearchDTO
• DataSerieGetDTO
• DataSimpleProvenanceGetDTO
• DataUpdateDTO
• DataVariableSeriesGetDTO
• DeviceCreationDTO
• DeviceGetDTO
• DeviceGetDetailsDTO
• DocumentGetDTO
• EntityCreationDTO
• EntityDetailsDTO
• EntityGetDTO
• EntityUpdateDTO
• ErrorDTO
• ErrorResponse
• EventCreationDTO
• EventDetailsDTO
• EventGetDTO
• EventUpdateDTO
• ExperimentCreationDTO
• ExperimentGetDTO
• ExperimentGetListDTO
• FacilityAddressDTO
• FacilityCreationDTO
• FacilityGetDTO
• FacilityGetWithGeometryDTO
• FacilityNamedDTO
• FacilityUpdateDTO
• FactorCategoryGetDTO
• FactorCreationDTO
• FactorDetailsGetDTO
• FactorGetDTO
• FactorLevelCreationDTO
• FactorLevelGetDTO
• FactorLevelGetDetailDTO
• FactorUpdateDTO
• Faidarev1CallDTO
• Faidarev1CallListResponse
• Faidarev1ContactDTO
• Faidarev1DataLinkDTO
• Faidarev1DatasetAuthorshipDTO
• Faidarev1GermplasmDTO
• Faidarev1GermplasmListResponse
• Faidarev1LastUpdateDTO
• Faidarev1LocationDTO
• Faidarev1LocationListResponse
• Faidarev1MethodDTO
• Faidarev1ObservationVariableDTO
• Faidarev1ObservationVariableListResponse
• Faidarev1ScaleDTO
• Faidarev1StudyDTO
• Faidarev1StudyListResponse
• Faidarev1StudySummaryDTO
• Faidarev1TraitDTO
• Faidarev1TrialAdditionalInfoDTO
• Faidarev1TrialDTO
• Faidarev1TrialListResponse
• FavoriteCreationDTO
• FavoriteGetDTO
• FavoriteGetGraphNameDTO
• Feature
• FeatureCollection
• FontConfigDTO
• FrontConfigDTO
• FundingGetDTO
• GeoJsonObject
• GeometryCollection
• GeometryDTO
• GermplasmCreationDTO
• GermplasmGetAllDTO
• GermplasmGetSingleDTO
• GermplasmGroupCreationDTO
• GermplasmGroupGetDTO
• GermplasmGroupGetWithDetailsDTO
• GermplasmGroupUpdateDTO
• GermplasmSearchFilter
• GermplasmUpdateDTO
• GetByUrisWithSharedResourceInstanceDTO
• Graph
• GraphConfigDTO
• GraphEventManager
• GroupCreationDTO
• GroupDTO
• GroupUpdateDTO
• GroupUserProfileDTO
• GroupUserProfileModel
• InterestEntityCreationDTO
• InterestEntityDetailsDTO
• InterestEntityGetDTO
• InterestEntityUpdateDTO
• InternetAddress
• LineString
• ListItemDTO
• LngLatAlt
• Locale
• LocationObservationDTO
• Lock
• MatomoConfigDTO
• MenuItemDTO
• MetadataDTO
• MethodCreationDTO
• MethodDetailsDTO
• MethodGetDTO
• MethodUpdateDTO
• MetricDTO
• MetricPeriodDTO
• Model
• ModelProperty
• MotivationGetDTO
• MotivationModel
• MoveCreationDTO
• MoveDetailsDTO
• MoveGetDTO
• MoveUpdateDTO
• MultiLineString
• MultiPoint
• MultiPolygon
• MultipleErrorDTO
• MultipleErrorListDTO
• MultipleErrorResponse
• NamedResourceDTO
• NamedResourceDTOExperimentModel
• NamedResourceDTOFacilityModel
• NamedResourceDTOFactorLevelModel
• NamedResourceDTOGroupModel
• NamedResourceDTOOrganizationModel
• NamedResourceDTOProjectModel
• NamedResourceDTOSiteModel
• NamedResourceDTOVariableModel
• NamedResourceDTOVariablesGroupModel
• OWLClassPropertyRestrictionDTO
• ObjectNamedResourceDTO
• ObjectUriResponse
• OntologyAgroportalDTO
• OrcidRecordDTO
• OrderBy
• OrganizationCreationDTO
• OrganizationDagDTO
• OrganizationGetDTO
• OrganizationUpdateDTO
• PaginationDTO
• PersonDTO
• PersonModel
• Point
• Polygon
• PositionCreationDTO
• PositionGetDTO
• PrefixMapping
• ProfileCreationDTO
• ProfileGetDTO
• ProfileModel
• ProfileUpdateDTO
• ProjectCreationDTO
• ProjectGetDTO
• ProjectGetDetailDTO
• PropertiesByDomainDTO
• ProvEntityModel
• ProvenanceCreationDTO
• ProvenanceGetDTO
• ProvenanceUpdateDTO
• RDFObjectRelationDTO
• RDFPropertyDTO
• RDFPropertyGetDTO
• RDFTypeDTO
• RDFTypeTranslatedDTO
• ResourceTreeDTO
• RouteDTO
• SPARQLLabel
• SPARQLModelRelation
• ScientificObjectCreationDTO
• ScientificObjectDetailByExperimentsDTO
• ScientificObjectDetailDTO
• ScientificObjectExportDTO
• ScientificObjectNodeDTO
• ScientificObjectNodeWithChildrenDTO
• ScientificObjectUpdateDTO
• SharedResourceInstanceDTO
• SiteAddressDTO
• SiteCreationDTO
• SiteGetDTO
• SiteGetListDTO
• SiteGetWithGeometryDTO
• SiteUpdateDTO
• SpeciesDTO
• StatusDTO
• StringURIsListDTO
• TargetPositionCreationDTO
• ThemeConfigDTO
• TokenGetDTO
• TransactionHandler
• URIGlobalSearchDTO
• URITypesDTO
• URIsListPostDTO
• UnitCreationDTO
• UnitDetailsDTO
• UnitGetDTO
• UnitUpdateDTO
• UserCreationDTO
• UserFrontConfigDTO
• UserGetDTO
• UserUpdateDTO
• VariableCopyResponseDTO
• VariableCreationDTO
• VariableDatatypeDTO
• VariableDetailsDTO
• VariableGetDTO
• VariableUpdateDTO
• VariablesGroupCreationDTO
• VariablesGroupGetDTO
• VariablesGroupUpdateDTO
• VersionInfoDTO
• VueDataTypeDTO
• VueObjectTypeDTO
• VueRDFTypeDTO
• VueRDFTypeParameterDTO
• VueRDFTypePropertyDTO

Documentation For Authorization

All endpoints do not require authorization.

Author