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P2GX

Precision Phenome & Genome eXploration

14 followers
Germany

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Overview
Repositories
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Welcome to P2GX!

This is the homepage of the Robinson Laboratory at Berlin Institute of Health and the Jackson Laboratory for Genomic Medicine. Our group focuses on the development of the Human Phenotype Ontology, other ontologies and software for translational genomics.

Popular repositories Loading

gpsea gpseaPublic
A Python library for discovery of genotype-phenotype associations
Python 12 1
phenoboard phenoboardPublic
HPO Curation with Phenopackets
TypeScript 9 3
phenopacket2prompt phenopacket2promptPublic
GA4GH Phenopacket to LLM prompt
Java 8 1
phenotron phenotronPublic
The newest prime of the transformers for phenopackets
Python 3
maxodiff maxodiffPublic
Medical Action Ontology terms for differential diagnosis
Java 3
fenominal fenominalPublic
Rust implementation of fenominal
Rust 2

Repositories

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Showing 10 of 46 repositories

bio-ontollm Public
Approaches to biomedical knowledge: Ontologies and Large Language Models
P2GX/bio-ontollm's past year of commit activity
Python 2MIT 0 2 0 Updated Aug 12, 2026
phenosign Public
Phenopacket to Synergy and Correlation
P2GX/phenosign's past year of commit activity
Python 0BSD-3-Clause 0 4 0 Updated Aug 12, 2026
BOQA Public
Java implementation of the Bayesian Ontology Query Algorithm (BOQA)
P2GX/BOQA's past year of commit activity
Java 0AGPL-3.0 0 9 2 Updated Aug 12, 2026
PhenoXtract Public
A configurable ETL pipeline for converting structured tabular data sources into Phenopackets
P2GX/PhenoXtract's past year of commit activity
Rust 2 0 37 6 Updated Aug 11, 2026
hrmdbq Public
Human Regulatory Mutation Database Curation
P2GX/hrmdbq's past year of commit activity
TypeScript 0MIT 1 0 1 Updated Aug 11, 2026
ontologizer-gui Public
Ontologizer Tauri App
P2GX/ontologizer-gui's past year of commit activity
TypeScript 2MIT 1 1 0 Updated Aug 10, 2026
phenoboard Public
HPO Curation with Phenopackets
P2GX/phenoboard's past year of commit activity
TypeScript 9MIT 3 14 0 Updated Aug 10, 2026
ga4ghphetools Public
Rust implementation of GA4GH Phenopacket Schema Tooling
P2GX/ga4ghphetools's past year of commit activity
Rust 1BSD-3-Clause 0 5 0 Updated Aug 9, 2026
hpotools Public
Human Phenotype Ontology tools
P2GX/hpotools's past year of commit activity
Java 1MIT 0 5 3 Updated Aug 9, 2026
ng-hpo-uikit Public
Angular UI toolkit for HPO applications
P2GX/ng-hpo-uikit's past year of commit activity
TypeScript 1MIT 0 1 0 Updated Aug 7, 2026

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