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Question about the input of the kinaseSubstrateScore function

Status: Open.

#19In PYangLab/PhosR;

· iamagerm opened on Sep 4, 2025

The predicted kinase to substrates by PhosR

Status: Open.

#18In PYangLab/PhosR;

· xiaocong3333 opened on May 28, 2024

I have a question for Step 4: Identifying stably phosphorylated sites and Step 5: Normalization and batch correction of data sets

Status: Open.

#17In PYangLab/PhosR;

· xiaocong3333 opened on May 13, 2024

normalization of phosphosites to protein levels

Status: Open.

#16In PYangLab/PhosR;

· dorvashmr opened on Feb 14, 2024

Signalome function throws error

Status: Open.

#15In PYangLab/PhosR;

· adhutz opened on May 5, 2023

Imputation function not working

Status: Open.

#14In PYangLab/PhosR;

· Januka-K opened on Feb 15, 2023

Mistake in kinaseSubstrateScore?

Status: Open.

#13In PYangLab/PhosR;

· DijkJel opened on Dec 1, 2022

Kinase annotations question

Status: Open.

#12In PYangLab/PhosR;

· ravitharakan opened on Sep 12, 2022

Question on multi phosphorylated peptides

Status: Open.

#11In PYangLab/PhosR;

· laurenctang opened on Aug 30, 2022

error with kinaseSubstrateScore()

Status: Open.

#10In PYangLab/PhosR;

· canbruce1234 opened on Aug 26, 2022

shuffled module names in signalomes() and plotSignalomeMap() output figures

Status: Open.

#7In PYangLab/PhosR;

· IwanParf opened on Apr 23, 2022