Update CI and primary development workflow to Pixi - #2244

Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged

Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom
VeckoTheGecko:pixi-pixi-pixi

Conversation

@VeckoTheGecko

@VeckoTheGeckoVeckoTheGecko commented Sep 26, 2025•
edited
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Changes:

  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies
    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter

Fixes#2205

Draft for now to test CI (couldn't test locally)

Pending:

  • Update contributing guidelines (future PR)

@VeckoTheGecko
VeckoTheGeckoforce-pushed the pixi-pixi-pixi branch 2 times, most recently from 35f0bd2 to 5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko

VeckoTheGecko commented Sep 26, 2025

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Looks like the RTD build is failing with the following error message

Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.

which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority

@VeckoTheGeckoVeckoTheGecko mentioned this pull request Sep 26, 2025
Closed
@VeckoTheGecko

VeckoTheGecko commented Sep 26, 2025

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erikvansebille
erikvansebille reviewed Sep 26, 2025
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Comment threadpyproject.toml Outdated
@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko merged commit 7926db8 into Parcels-code:v4-devSep 26, 2025
6 of 7 checks passed
@github-project-automationgithub-project-automationBot moved this from Backlog to Done in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko deleted the pixi-pixi-pixi branch September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko mentioned this pull request Sep 26, 2025
Closed
@VeckoTheGeckoVeckoTheGecko mentioned this pull request Oct 6, 2025
Closed
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@erikvansebilleerikvansebilleerikvansebille approved these changes

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Update primary development workflow to use Pixi

2 participants

@VeckoTheGecko@erikvansebille
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

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Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


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ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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ContributorAuthor
image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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Reviewers

@erikvansebilleerikvansebilleerikvansebille approved these changes

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Parcels development

Status: Done


Milestone


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Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

Copy link


Copy Markdown

Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


Copy Markdown

ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


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ContributorAuthor
image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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Reviewers

@erikvansebilleerikvansebilleerikvansebille approved these changes

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Labels


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Projects

Parcels development

Status: Done


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

Copy link


Copy Markdown

Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


Copy Markdown

ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


Copy Markdown

ContributorAuthor
image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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Sign in to comment

Reviewers

@erikvansebilleerikvansebilleerikvansebille approved these changes

Assignees


No one assigned


Labels


None yet


Projects

Parcels development

Status: Done


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

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Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

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Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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@erikvansebilleerikvansebilleerikvansebille approved these changes

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Status: Done


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Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

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Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


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ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

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ContributorAuthor
image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
into
Parcels-code:v4-devSep 26, 2025

6 of 7 checks passed

@github-project-automationgithub-project-automationBot
moved this from Backlog
to Done
in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
deleted the

pixi-pixi-pixi

branch
September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Oct 6, 2025
 Closed

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Reviewers

@erikvansebilleerikvansebilleerikvansebille approved these changes

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Projects

Parcels development

Status: Done


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


2 participants

@VeckoTheGecko@erikvansebille

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
Update CI and primary development workflow to Pixi - #2244
Merged
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Sep 26, 2025
Merged
Update CI and primary development workflow to Pixi#2244
VeckoTheGecko merged 25 commits into
Parcels-code:v4-devfrom 
VeckoTheGecko:pixi-pixi-pixi
Conversation
@VeckoTheGecko
@VeckoTheGeckoVeckoTheGecko
commented
Sep 26, 2025•

edited

Loading

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Contributor
Changes:
  • Splits up our dependencies into "features" used in pixi to compose environments
  • Use Pixi to install Parcels from source
  • Defines Pixi tasks for our development workflow
  • Updates all our CI to use Pixi
  • Updates naming of CI workflows to reflect the command you run locally
  • Remove unused dependencies

    • pymbolic
    • ffmpeg
    • psutil and psutil-types
  • Add taplo as TOML formatter
Fixes#2205
Draft for now to test CI (couldn't test locally)
Pending:
  • Update contributing guidelines (future PR)
@VeckoTheGecko
VeckoTheGeckoforce-pushed
the
pixi-pixi-pixi
branch
2 times, most recently
from
35f0bd2 to
5a4eacbCompareSeptember 26, 2025 11:43
@VeckoTheGecko
Remove pymbolic dependency
e7e5f4c
@VeckoTheGecko
Move Pixi items to pixi.toml
fa06398
@VeckoTheGecko
Section pixi.toml into features
e5f019d
@VeckoTheGecko
Remove ffmpeg and psutil dependencies
7fb1279
@VeckoTheGecko
Add pooch to pixi deps
ceef8b1
@VeckoTheGecko
Move task definitions to features
82bec4f
@VeckoTheGecko
Add toml formatter
8bba97e
@VeckoTheGecko
Add pixi py311 and py312 features
be98016
@VeckoTheGecko
Add environment definitions
143d705
@VeckoTheGecko
Add pixi badge
fe6b1bb
@VeckoTheGecko
Update RTD to use pixi
3d93585
@VeckoTheGecko
Migrate CI to use Pixi
92c6518
Leveraging some of the work I did for xarray ;)
@VeckoTheGecko
Migrate coverage to use pytest-cov
d318e69
@VeckoTheGecko
Migrate integration tests to use pixi
2dad301
@VeckoTheGecko
Refactor Coverage report to job level constant
893b44d
@VeckoTheGecko
Update typechecking to use Pixi
b58949e
@VeckoTheGecko
Migrate parcels install to use pixi-build
70a433d
@VeckoTheGecko
Update command in CI to pixi run
60237c6
@VeckoTheGecko
Update linkcheck workflow to be pixi
664eac8
@VeckoTheGecko
Remove comments
ee0a5cc
@VeckoTheGecko
Update RTD config
c380311
@VeckoTheGecko
Update integration CI workflow
52ebea5
@VeckoTheGecko
Fix RTD
e28caa7
@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


Copy Markdown

ContributorAuthor
Looks like the RTD build is failing with the following error message
 Missing configuration option At least one of the following configuration options is required: build.tools or build.commands.
which is quite strange since I pretty much following the docs exactly (docs, readthedocs/readthedocs.org#12155) . I'll post an issue in RTD to update their example and see what they say. Low priority
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
Sep 26, 2025

Closed

@VeckoTheGecko
VeckoTheGecko
commented
Sep 26, 2025

Copy link


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ContributorAuthor
image
erikvansebille
erikvansebille
reviewed
Sep 26, 2025
View reviewed changes
Comment threadpyproject.toml
Outdated

@VeckoTheGecko@erikvansebille
Update pyproject.toml
8f08985
Co-authored-by: Erik van Sebille <e.vansebille@uu.nl>
@VeckoTheGecko
VeckoTheGecko
merged commit 7926db8
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Parcels-code:v4-devSep 26, 2025

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in Parcels developmentSep 26, 2025
@VeckoTheGecko
VeckoTheGecko
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pixi-pixi-pixi

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September 26, 2025 12:07
@VeckoTheGeckoVeckoTheGecko
mentioned this pull request
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@VeckoTheGeckoVeckoTheGecko
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@erikvansebilleerikvansebilleerikvansebille approved these changes

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Parcels development

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Successfully merging this pull request may close these issues.

Update primary development workflow to use Pixi


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@VeckoTheGecko@erikvansebille