View PharMolix's full-sized avatar
96 followers · 3 following

    Achievements

    Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark

    Achievements

    Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark

    Block or report PharMolix

    Block user

    Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

    You must be logged in to block users.

    Content in all repositories owned by your account will be closed.
    Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
    Report abuse

    Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

    Report abuse

    Popular repositories Loading

    1. OpenBioMed OpenBioMedPublic

      Python 1.1k 132

    2. LangCell LangCellPublic

      Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

      Python 71 11

    3. SToFM SToFMPublic

      Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

      Python 54 8

    4. MutaPLM MutaPLMPublic

      Python 22 2

    5. OCSU OCSUPublic

      Python 9 2

    6. OpenAI4Sci OpenAI4SciPublic

    , 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
     blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

    Skip to content
    View PharMolix's full-sized avatar
    96
followers
 · 3
following

      Achievements
      Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
      Achievements
      Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
      
Block or report PharMolix

      Block user
      
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

      
You must be logged in to block users.

      
Content in all repositories owned by your account will be closed.

      
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

      Report abuse
      
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

      Report abuse
      
Popular repositories
Loading
      1. 
OpenBioMed
OpenBioMedPublic
        Python
1.1k

132

      2. 
LangCell
LangCellPublic
        
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

        Python
71

11

      3. 
SToFM
SToFMPublic
        
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

        Python
54

8

      4. 
MutaPLM
MutaPLMPublic
        Python
22

2

      5. 
OCSU
OCSUPublic
        Python
9

2

      6. 
OpenAI4Sci
OpenAI4SciPublic
      
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

      Skip to content
      View PharMolix's full-sized avatar
      96
followers
 · 3
following

        Achievements
        Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
        Achievements
        Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
        
Block or report PharMolix

        Block user
        
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

        
You must be logged in to block users.

        
Content in all repositories owned by your account will be closed.

        
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

        Report abuse
        
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

        Report abuse
        
Popular repositories
Loading
        1. 
OpenBioMed
OpenBioMedPublic
          Python
1.1k

132

        2. 
LangCell
LangCellPublic
          
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

          Python
71

11

        3. 
SToFM
SToFMPublic
          
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

          Python
54

8

        4. 
MutaPLM
MutaPLMPublic
          Python
22

2

        5. 
OCSU
OCSUPublic
          Python
9

2

        6. 
OpenAI4Sci
OpenAI4SciPublic
        
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

        Skip to content
        View PharMolix's full-sized avatar
        96
followers
 · 3
following

          Achievements
          Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
          Achievements
          Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
          
Block or report PharMolix

          Block user
          
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

          
You must be logged in to block users.

          
Content in all repositories owned by your account will be closed.

          
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

          Report abuse
          
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

          Report abuse
          
Popular repositories
Loading
          1. 
OpenBioMed
OpenBioMedPublic
            Python
1.1k

132

          2. 
LangCell
LangCellPublic
            
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

            Python
71

11

          3. 
SToFM
SToFMPublic
            
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

            Python
54

8

          4. 
MutaPLM
MutaPLMPublic
            Python
22

2

          5. 
OCSU
OCSUPublic
            Python
9

2

          6. 
OpenAI4Sci
OpenAI4SciPublic
          
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

          Skip to content
          View PharMolix's full-sized avatar
          96
followers
 · 3
following

            Achievements
            Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
            Achievements
            Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
            
Block or report PharMolix

            Block user
            
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

            
You must be logged in to block users.

            
Content in all repositories owned by your account will be closed.

            
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

            Report abuse
            
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

            Report abuse
            
Popular repositories
Loading
            1. 
OpenBioMed
OpenBioMedPublic
              Python
1.1k

132

            2. 
LangCell
LangCellPublic
              
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

              Python
71

11

            3. 
SToFM
SToFMPublic
              
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

              Python
54

8

            4. 
MutaPLM
MutaPLMPublic
              Python
22

2

            5. 
OCSU
OCSUPublic
              Python
9

2

            6. 
OpenAI4Sci
OpenAI4SciPublic
            
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

            Skip to content
            View PharMolix's full-sized avatar
            96
followers
 · 3
following

              Achievements
              Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
              Achievements
              Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
              
Block or report PharMolix

              Block user
              
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

              
You must be logged in to block users.

              
Content in all repositories owned by your account will be closed.

              
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

              Report abuse
              
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

              Report abuse
              
Popular repositories
Loading
              1. 
OpenBioMed
OpenBioMedPublic
                Python
1.1k

132

              2. 
LangCell
LangCellPublic
                
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

                Python
71

11

              3. 
SToFM
SToFMPublic
                
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

                Python
54

8

              4. 
MutaPLM
MutaPLMPublic
                Python
22

2

              5. 
OCSU
OCSUPublic
                Python
9

2

              6. 
OpenAI4Sci
OpenAI4SciPublic
              
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

              Skip to content
              View PharMolix's full-sized avatar
              96
followers
 · 3
following

                Achievements
                Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
                Achievements
                Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
                
Block or report PharMolix

                Block user
                
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

                
You must be logged in to block users.

                
Content in all repositories owned by your account will be closed.

                
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

                Report abuse
                
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

                Report abuse
                
Popular repositories
Loading
                1. 
OpenBioMed
OpenBioMedPublic
                  Python
1.1k

132

                2. 
LangCell
LangCellPublic
                  
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

                  Python
71

11

                3. 
SToFM
SToFMPublic
                  
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

                  Python
54

8

                4. 
MutaPLM
MutaPLMPublic
                  Python
22

2

                5. 
OCSU
OCSUPublic
                  Python
9

2

                6. 
OpenAI4Sci
OpenAI4SciPublic
                
, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

                Skip to content
                View PharMolix's full-sized avatar
                96
followers
 · 3
following

                  Achievements
                  Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
                  Achievements
                  Achievement: Starstruckx3Achievement: QuickdrawAchievement: Pull Shark
                  
Block or report PharMolix

                  Block user
                  
Prevent this user from interacting with your repositories and sending you notifications.
Learn more about blocking users.

                  
You must be logged in to block users.

                  
Content in all repositories owned by your account will be closed.

                  
Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.

                  Report abuse
                  
Contact GitHub support about this user’s behavior.
Learn more about reporting abuse.

                  Report abuse
                  
Popular repositories
Loading
                  1. 
OpenBioMed
OpenBioMedPublic
                    Python
1.1k

132

                  2. 
LangCell
LangCellPublic
                    
Code for "LangCell: Language-Cell Pre-training for Cell Identity Understanding".

                    Python
71

11

                  3. 
SToFM
SToFMPublic
                    
Code for "SToFM: a Multi-scale Foundation Model for Spatial Transcriptomics".

                    Python
54

8

                  4. 
MutaPLM
MutaPLMPublic
                    Python
22

2

                  5. 
OCSU
OCSUPublic
                    Python
9

2

                  6. 
OpenAI4Sci
OpenAI4SciPublic