BranchesTags

Latest commit

History

41 Commits

Folders and files

NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md

Repository files navigation

2023 MagIC Tutorial 👩‍💻

This repository contains materials associated with the 2023 MagIC workshop tutorial.

Schedule for the group working sessions and tutorials 🗓️

TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up

More info about PmagPy 🐧

The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.

Users of PmagPy should cite the open access article:

Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.

Much more about PmagPy can be discovered in the PmagPy docs.

The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).

Contribute and raise issues 🙌

We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.

Check out our contributing guide.

About

This repository contains materials associated with the 2023 MagIC workshop tutorial

Resources

Readme
CC0-1.0 license
Activity
Custom properties

Stars

1 star

Watchers

6 watching

Forks

1 fork
Report repository

Releases

Packages

Contributors

Languages

, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
BranchesTags
Latest commit
History
41 Commits
Folders and files
NameName
Last commit message
Last commit date
1_MagIC_intro
1_MagIC_intro
2_PmagGUI_intro
2_PmagGUI_intro
3_PmagPy_in_action
3_PmagPy_in_action
.gitignore
.gitignore
LICENSE
LICENSE
README.md
README.md
Repository files navigation
2023 MagIC Tutorial 👩‍💻
This repository contains materials associated with the 2023 MagIC workshop tutorial.
Schedule for the group working sessions and tutorials 🗓️
TimeThemeActivity
9:00 - 10:30Introduction to uploading and downloading data from MagICWe will first go through the steps of uploading a contribution to MagIC using templates. We will then inspect MagIC contributions that are in the database using PmagPy hosted on the EarthRef JupyterHub.
10:30 - 10:45Coffee Break
10:45 - 12:00Making a MagIC contribution from measurement data with PmagGUIWe will go through an example work flow of converting from lab format to MagIC format using the Pmag_GUI application that is part of PmagPy. We will make fits to data using Demag_GUI and then create a file that can be uploaded to MagIC.
12:00 - 13:00Lunch
13:00 - 14:45Interacting with MagIC data using Jupyter notebooksWe will continue to use the MagIC API to download data and conduct data analysis and visualizations within notebooks running on the EarthRef JupyterHub
14:45 - 15:00Coffee Break
15:00 - 16:50MagIC and PmagPy office hoursThis time is designed to be exploration and work time. Talk to folks on the MagIC team and PmagPy developers about MagIC and integrating it into data development and data analysis workflows. We can explore data conversion scripts --- bring your own data! There will also be the option of getting a Thellier_GUI walk through from @bcych
16:50 - 17:00Wrap-up
More info about PmagPy 🐧
The code base for the PmagPy project has been built up over the years by Lisa Tauxe (@ltauxe; Professor Emerita at the Scripps Institution of Oceanography). Nick Swanson-Hysell (@swanson-hysell; Associate Professor at UC Berkeley), Lori Jonestrask (@moonshoes87), and Ron Shaar (@ronshaar, Senior Lecturer at the Hebrew University of Jerusalem) have made substantial contributions to the project as have others in the open community of contributors.
Users of PmagPy should cite the open access article:
Tauxe, L., R. Shaar, L. Jonestrask, N. L. Swanson-Hysell, R. Minnett, A. A. P. Koppers, C. G. Constable, N. Jarboe, K. Gaastra, and L. Fairchild (2016), PmagPy: Software package for paleomagnetic data analysis and a bridge to the Magnetics Information Consortium (MagIC) Database, Geochem. Geophys. Geosyst., 17, doi:10.1002/2016GC006307.
Much more about PmagPy can be discovered in the PmagPy docs.
The tutorial materials in this repository were developed by Nick Swanson-Hysell (@swanson-hysell) and Lisa Tauxe (@ltauxe).
Contribute and raise issues 🙌
We welcome anyone to join us in improving PmagPy and helping one another learn as we conduct reproducible research in rock and paleomagnetism. You can do this be contributing code, improving documentation, or raising issues.
Check out our contributing guide.
About
This repository contains materials associated with the 2023 MagIC workshop tutorial
Resources
Readme
CC0-1.0 license
Activity
Custom properties
Stars
1 star
Watchers
6 watching
Forks
1 fork
Report repository
Releases
Packages
Contributors
Languages