Pombert Lab

The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.

This repository contains scripts from published or submitted manuscripts.

A2GB is a pipeline that will transform the genome annotation files exported from Apollo in preparation for sequence submission to NCBI’s GenBank.

A simple pipeline to create and search HMM models against reference protein databases.

Miscellaneous scripts

This pipeline reconstructs the composition of species from 16S amplicon sequencing datasets.

The SSRG pipeline was created as a simple and focused tool to investigate genetic diversity between genomes.

The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

The A2A pipeline guides users from genome assembly to annotations.

The QueGO pipeline identifies potential homologs to proteins related to specific functionality.