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    1. hnscc-survival hnscc-survivalPublic

      Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

      Python 1

    2. Pathonix PathonixPublic

      Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

      Python

    3. rulehub_ai_skill_demo rulehub_ai_skill_demoPublic

      Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

    4. RuleHub RuleHubPublic

      Forked from vcellmike/RuleHub

      A repository of rule-based models. Could this be the start of something great?

      JavaScript 1

    , 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
     blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
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addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
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}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
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var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Psuedonerd (Vishnu Mukku) · GitHub
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      1. 
hnscc-survival
hnscc-survivalPublic
        
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

        Python
1

      2. 
Pathonix
PathonixPublic
        
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

        Python
      3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
        
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

      4. 
RuleHub
RuleHubPublic
        
Forked from vcellmike/RuleHub
        
A repository of rule-based models. Could this be the start of something great?

        JavaScript
1

      
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Psuedonerd (Vishnu Mukku) · GitHub
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        1. 
hnscc-survival
hnscc-survivalPublic
          
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

          Python
1

        2. 
Pathonix
PathonixPublic
          
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

          Python
        3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
          
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

        4. 
RuleHub
RuleHubPublic
          
Forked from vcellmike/RuleHub
          
A repository of rule-based models. Could this be the start of something great?

          JavaScript
1

        
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
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found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
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var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Psuedonerd (Vishnu Mukku) · GitHub
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          1. 
hnscc-survival
hnscc-survivalPublic
            
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

            Python
1

          2. 
Pathonix
PathonixPublic
            
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

            Python
          3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
            
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

          4. 
RuleHub
RuleHubPublic
            
Forked from vcellmike/RuleHub
            
A repository of rule-based models. Could this be the start of something great?

            JavaScript
1

          
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
Psuedonerd (Vishnu Mukku) · GitHub
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            1. 
hnscc-survival
hnscc-survivalPublic
              
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

              Python
1

            2. 
Pathonix
PathonixPublic
              
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

              Python
            3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
              
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

            4. 
RuleHub
RuleHubPublic
              
Forked from vcellmike/RuleHub
              
A repository of rule-based models. Could this be the start of something great?

              JavaScript
1

            
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Psuedonerd (Vishnu Mukku) · GitHub
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              1. 
hnscc-survival
hnscc-survivalPublic
                
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

                Python
1

              2. 
Pathonix
PathonixPublic
                
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

                Python
              3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
                
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

              4. 
RuleHub
RuleHubPublic
                
Forked from vcellmike/RuleHub
                
A repository of rule-based models. Could this be the start of something great?

                JavaScript
1

              
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Psuedonerd (Vishnu Mukku) · GitHub
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                Achievement: QuickdrawAchievement: Pull Sharkx2
                
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                1. 
hnscc-survival
hnscc-survivalPublic
                  
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

                  Python
1

                2. 
Pathonix
PathonixPublic
                  
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

                  Python
                3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
                  
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

                4. 
RuleHub
RuleHubPublic
                  
Forked from vcellmike/RuleHub
                  
A repository of rule-based models. Could this be the start of something great?

                  JavaScript
1

                
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
// Create style element if it doesn't exist
var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
style.textContent = '
/* Invert everything except media */
html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
}
/* Restore images, videos, iframes, canvas */
img, video, iframe, canvas, svg, picture, [style*="background-image"] {
filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
}
/* Scrollbars */
::-webkit-scrollbar { background: #1a1a2e !important; }
::-webkit-scrollbar-thumb { background: #444 !important; }
::-webkit-scrollbar-thumb:hover { background: #555 !important; }
/* Selection */
::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
';
}
function removeDarkMode() {
var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
}
// Toggle with Alt+Shift+D
document.addEventListener('keydown', function(e) {
if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
console.log('[Universal Dark Mode] Enabled');
} else {
removeDarkMode();
console.log('[Universal Dark Mode] Disabled');
}
}
});
// Apply on load
applyDarkMode();
// Re-apply on dynamic content
var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
Psuedonerd (Vishnu Mukku) · GitHub
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                  Achievements
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Popular repositories
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                  1. 
hnscc-survival
hnscc-survivalPublic
                    
Develops, trains, and validates a prognostic model for HPV-negative Head and Neck Cancer using multi-omic data sourced from the CPTAC and TCGA

                    Python
1

                  2. 
Pathonix
PathonixPublic
                    
Pathonix is an advanced tool for classifying histopathological images for the detection of Ovarian Cancer. It is driven by explainable and efficient ensemble learning using three separate DL models.

                    Python
                  3. 
rulehub_ai_skill_demo
rulehub_ai_skill_demoPublic
                    
Minimal demo of a skill.md workflow for explaining RuleHub-style BNGL models; contains input and output files.

                  4. 
RuleHub
RuleHubPublic
                    
Forked from vcellmike/RuleHub
                    
A repository of rule-based models. Could this be the start of something great?

                    JavaScript
1