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pbdDMAT

pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.

With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.

The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.

Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.

Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.

Installation

pbdDMAT requires

  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.

Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():

install.packages("pbdDMAT")

The development version is maintained on GitHub:

remotes::install_github("RBigData/pbdDMAT")

See the vignette for installation troubleshooting.

Usage

# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()

Save this program as pbd_example.r and run it via:

mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.

Authors

pbdDMAT is authored and maintained by the pbdR core team:

  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel

With additional contributions from:

  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())

About

Distributed matrix classes and methods for the pbdR project.

r-pbd.org/

Topics

hpclinear-algebrampipbdrrscalapackstatistics

Resources

Readme
GPL-2.0 license
Activity
Custom properties

Stars

17 stars

Watchers

5 watching

Forks

9 forks
Report repository

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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
Releases
Packages
Contributors
Languages

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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
Releases
Packages
Contributors
Languages

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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
Releases
Packages
Contributors
Languages

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GitHub - RBigData/pbdDMAT: Distributed matrix classes and methods for the pbdR project. · GitHub
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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
Releases
Packages
Contributors
Languages

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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
Topics
hpclinear-algebrampipbdrrscalapackstatistics
Resources
Readme
GPL-2.0 license
Activity
Custom properties
Stars
17 stars
Watchers
5 watching
Forks
9 forks
Report repository
Releases
Packages
Contributors
Languages

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filter: invert(1) hue-rotate(180deg) !important;
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GitHub - RBigData/pbdDMAT: Distributed matrix classes and methods for the pbdR project. · GitHub
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pbdDMAT
pbdDMAT is an R package for distributed matrix algebra and statistics computations over MPI.
With few exceptions (ff, bigalgebra, etc.), R does computations in memory. If the memory of a matrix is too large for a single node, then distributing the ownership of the matrix across multiple nodes is an effective strategy in working with such large data.
The pbdDMAT package contains numerous routines to help with the distribution and management of data, as well as functions for summarizing, inspecting, and analyzing distributed matrices.
Often the syntax is identical to serial R, only instead of calling cov(x) on a matrix x, you would call it on a distributed matrix x. This is possible by extensive use of R's S3 and S4 methods.
Much of the numerical linear algebra is powered by the ScaLAPACK library, which is the distributed analogue of LAPACK, used extensively by R.
Installation
pbdDMAT requires
  • A system installation of MPI
  • R version 3.0.0 or higher
  • The pbdMPI and pbdBASE packages, as well as their dependencies.
Assuming you meet the system dependencies, you can install the stable version from CRAN using the usual install.packages():
install.packages("pbdDMAT")
The development version is maintained on GitHub:
remotes::install_github("RBigData/pbdDMAT")
See the vignette for installation troubleshooting.
Usage
# load the package
library(pbdDMAT)
# initialize the specialized MPI communicators
init.grid()
# create a 100x100 distributed matrix objectdx<- ddmatrix(1:100, 10)
# printdx
print(dx, all=TRUE)
# shut down the communicators and exit
finalize()
Save this program as pbd_example.r and run it via:
mpirun -np 2 Rscript pbd_example.r

Numerous other examples can be found in both the pbdDMAT vignette, as well as the pbdDEMO package and its corresponding vignette.
Authors
pbdDMAT is authored and maintained by the pbdR core team:
  • Drew Schmidt
  • Wei-Chen Chen
  • George Ostrouchov
  • Pragneshkumar Patel
With additional contributions from:
  • Lamy de la Chapelle Sebastien
  • The R Core team (some wrapper code taken from the base and stats packages)
  • ZhaoKang Wang (fixes/improvements to apply())
  • Michael Lawrence (fix for as.vector())
About
Distributed matrix classes and methods for the pbdR project.
r-pbd.org/
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hpclinear-algebrampipbdrrscalapackstatistics
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