Markdown for microRNA analysis

This repository contains notes for the installation and execution of bioinformatics tools as well as a code-lab scripts associated with a project for small RNA analysis of a non-model specie. It is not a final version of reproducible workflow, so use with discretion.

Author

Ricardo Gomez-Reyes

Contents

• Step 1) Quality assess and cleaning step
• Step 2) Databases curation
• Step 3) Non redundant loci
• Step 4) MicroRNA databases processing
• Step 5) Small RNAs assembly, annotation and quantification
• Step 6) Functional regulatory prediction
  • Step 6.1
  • Step 6.2
• Step 7) MicroRNA Expression Analysis