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1. CompOmics/ms2pipCompOmics/ms2pipPublic

   MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.

   HTML 49 19

2. CompOmics/DeepLCCompOmics/DeepLCPublic

   DeepLC: Retention time prediction for peptides carrying any modification.

   Python 79 26

3. CompOmics/ms2rescoreCompOmics/ms2rescorePublic

   Modular and user-friendly platform for AI-assisted rescoring of peptide identifications

   Python 67 23

4. CompOmics/psm_utilsCompOmics/psm_utilsPublic

   Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python

   Python 31 11

5. HUPO-PSI/mzSpecLibHUPO-PSI/mzSpecLibPublic

   mzSpecLib: A standard format to exchange/distribute spectral libraries

   Python 32 14

6. cascade-configcascade-configPublic

   Cascading Python configuration from the CLI and config files

   Python 1