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Refactor filenames to camelCase and remove unused files - #89

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DrPaulSharp merged 41 commits into
RascalSoftware:masterfrom
DrPaulSharp:refactor_filenames
Mar 2, 2023
Merged

Refactor filenames to camelCase and remove unused files#89
DrPaulSharp merged 41 commits into
RascalSoftware:masterfrom
DrPaulSharp:refactor_filenames

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@DrPaulSharpDrPaulSharp commented Feb 28, 2023•
edited by StephenNneji
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Filenames have been changed throughout the code to change to camelCase, remove unnecessary "RAT" prefixes, and/or make the purpose of the contents clearer. This closes#67
Some unused files have also been removed.

@DrPaulSharpDrPaulSharp mentioned this pull request Feb 28, 2023
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StephenNneji
StephenNneji reviewed Mar 1, 2023
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examples/manual/DSPCStandardLayers/t1toProblemDef.m to .../t1ToProblemDef.m

we should remove
targetFunctions/common/loopCppCustlayWrapper/testDLL_mex.mexa64
targetFunctions/common/loopCppCustlayWrapper/testDLL_mex_latest.mexa64

Comment threadAPI/outputFunction/specialEventDataClass.m Outdated
Comment threadAPI/parseOutToProblemDef.m
Comment threadcompile/RAT_main_compile/RAT_main.m
Comment threadcompile/simplex/ratSendTextOutput.m
Comment threadexamples/customLayers/orsoDSPCCustomLayers.m
Comment thread...etFunctions/common/loopCppCustomLayersWrapper/loopCppCustomLayersWrapperCustomLayersPoints.m Outdated
Comment thread...s/common/loopMatlabCustomLayers/mexCompile/loopMatlabCustomLayersWrapperCustomLayersSingle.m
Comment thread...unctions/common/loopMatlabCustomLayers/sourceCompile/loopMatlabCustomLayersWrapperXYPoints.m
Comment threadtargetFunctions/common/resampleLayers/SLDFunction.m
Comment threadtests/testCommonFunctions/testCommonFunctions.m Outdated
@DrPaulSharp
Renamed files in RAT\API and modified routine names within the code.
678e41a
@DrPaulSharp
Replaced file "parseClassToStructs.m" with "parseClassToStructs_new..m"
466958e
@DrPaulSharp
Renamed files in RAT\API\outputFcn and modified routine names within …
e372004
…the code.
@DrPaulSharp
Renamed files in RAT\ and modified routine names within the code.
bec0ecf
@DrPaulSharp
Corrected root filepath in "rmPaths.m"
d05e744
@DrPaulSharp
Renamed "RAT_main.m" to "RATMain.m"
53a31f6
@DrPaulSharp
Renamed all "reflectivity_calculation" routines to be camelCase
5e92fb9
@DrPaulSharp
Renamed routines in "targetFunctions\standard_TF" to camelCase
2717826
@DrPaulSharp
Renamed directory and routines in "targetFunctions\standard_TF\standa…
1bf381a
…rdTF_stanLay" to camelCase
@DrPaulSharp
Renamed directory and routines in "targetFunctions\standard_TF\standa…
5fe75aa
…rdTF_custLay" to camelCase
@DrPaulSharp
Renamed directory "targetFunctions\standard_TF" as "targetFunctions\s…
f14100f
…tandardTF"
@DrPaulSharp
Removed redundant routine "targetFunctions/common/legacyChanges\legac…
ef5b3f1
…yChanges.m"
@DrPaulSharp
Renamed various routines in "targetFunctions\common" to camelCase
ebb8cce
@DrPaulSharp
Renamed directory and routines in "targetFunctions\common\reflectivit…
7ffe77c
…yCalculations\Abeles" to camelCase
@DrPaulSharp
Renamed directory and routines in "targetFunctions\common\loopCppCust…
1782e67
…layWrapper" to camelCase
@DrPaulSharp
Renamed directory and routines in "targetFunctions\common\loopMatlabC…
7b27904
…ustomLayers" to camelCase
@DrPaulSharp
Renamed 3rdParty routines to camelCase
04eb5be
@DrPaulSharp
Renamed files in examples directory to camelCase
fda3ce2
@DrPaulSharp
Renamed directory and routines in "targetFunctions\common\Resolution_…
d2933aa
…Functions" to camelCase
@DrPaulSharp
Changed names of test files to camelCase and removed redunstand files…
1aa36f7
… "testCommonFunctions/DPPC_customXY.m" and "testCommonFunctions/StructsINOUTS.m"
@DrPaulSharp
Tidied up "addPaths.m" and updated "rmPaths.m"
a762889
@DrPaulSharp
Renamed files to use camelCase and aid clarity
d2ef85e
@DrPaulSharp
Further renaming
742a702
@DrPaulSharp
Renamed directory and routines in "compile\reflectivity_calculation_c…
747167f
…ompile_new" to camelCase
@DrPaulSharp
Renamed directory and routines in "compile\simplex_compile" to camelCase
791aeca
@DrPaulSharp
Renamed directory and routines in "compile\DE_compile" to camelCase
c286584
@DrPaulSharp
Corrected filepath in "addPaths.m" and "rmPaths.m"
c5dc867
@DrPaulSharp
Made changes to Jenkinsfile to reflect filename changes
1c295dd
@DrPaulSharp
Removed "rat" from variables in "addPaths.m" and "rmPaths.m"
4074471
@DrPaulSharp
BUG FIX - updated mentions of "ratRoot" in compilation and testing files
81dfb56
@DrPaulSharp
Removed redundant files and refactored fiels and variables
0f96ffc
@DrPaulSharp
Refactored filenames for "loopCpp..." routines
4655a4c
@DrPaulSharp
Further tidying up of files
7e4f61c
@DrPaulSharp
Added file "compile/reflectivityCalculation/reflectivityCalculation_m…
22121bc
…ex.mexmaci64"
@DrPaulSharp
Fixed issues arising from rebase and refactored filenames in "compile…
115c062
…" directory to camelCase
@DrPaulSharp
Changed new example file to camelCase and updated "rmPaths.m"
078388f
@DrPaulSharp
Simplified filenames in "targetFunctions\common\loopMatlabCustomLayers\"
eb79dc6
@DrPaulSharp
Updated function calls and removed stray commas and semicolons in DRE…
d4491ec
…AM files
@DrPaulSharp
Renamed compile and minimiser files to camelCase
b4f154e
@DrPaulSharp
Renamed routines in "minimisers\DREAM" to camelCase
f64bb81
StephenNneji
StephenNneji reviewed Mar 2, 2023
View reviewed changes
Comment threadminimisers/DREAM/functions/RATEvaluateModel.m Outdated
Comment threadminimisers/DREAM/functions/Whittle.m
Comment threadminimisers/DREAM/postprocessing/genparset.m Outdated
Comment threadminimisers/DREAM/functions/RATDREAMInitialize.m
Comment threadminimisers/DREAM/functions/RATDREAMCalcSetup.m
Comment threadminimisers/DREAM/functions/DREAMSetup.m Outdated
Comment threadminimisers/DREAM/functions/DREAMInitialize.m Outdated
Comment threadminimisers/DREAM/functions/DREAMCheck.m Outdated
Comment threadminimisers/DREAM/functions/DREAMCalcSetup.m Outdated
Comment threadminimisers/DREAM/functions/DREAMCalcSetupORIG.m
@DrPaulSharp
DrPaulSharp merged commit 9c7f917 into RascalSoftware:masterMar 2, 2023
@DrPaulSharp
DrPaulSharp deleted the refactor_filenames branch March 2, 2023 15:21
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Refactor filenames

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@DrPaulSharp@StephenNneji