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@RodriguezColmanLab

Rodriguez Colman Lab

Metabolism, stem cells and cancer. Academic lab deciphering metabolism as a regulator of cell fate.
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  1. CellPhenTrackerCellPhenTrackerPublic

    Set of OrganoidTracker plugins to measure and analyse fluorescent intensities.

    Python

  2. NuclearIDTrackerNuclearIDTrackerPublic

    Predicts cell types based on nucleus features (morphology, neighborhood). Allows for observing cell types in mouse small intestinal organoid time lapses.

    Jupyter Notebook

  3. KaryoMetabKaryoMetabPublic

    Reproducible computational workflow for the joint inference of chromosomal instability (CIN) patterns and metabolic states from single-cell RNA-seq data

    R 2

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