Rostlab

Pinned Loading

1. predictprotein-dockerpredictprotein-dockerPublic

   Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, in…

   Dockerfile 15 7

2. bio_embeddingsbio_embeddingsPublic

   Repository containing bio_embeddings resources

   2 1

3. EATEATPublic

   Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer annotations from a set of labeled lookup protein embeddings to …

   Python 41 7

4. VESPAVESPAPublic

   VESPA is a simple, yet powerful Single Amino Acid Variant (SAV) effect predictor based on embeddings of the Protein Language Model ProtT5.

   Python 36 9

5. TMbedTMbedPublic

   Transmembrane proteins predicted through Language Model embeddings

   1

6. ProtTransProtTransPublic

   Forked from agemagician/ProtTrans

   ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.

   Jupyter Notebook 11 1