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Make _recompile derived state computed from _changes #74

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Open
Make _recompile derived state computed from _changes#74

Description

@wshlavacek
wshlavacek
opened on May 9, 2026

Location:

  • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
  • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)

Original markers:

_recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}

_recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.

Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.

What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.

Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.

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var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
    Skip to content
    Make _recompile derived state computed from _changes #74
    Open
    Open
    Make _recompile derived state computed from _changes#74
    Description
    @wshlavacek
    wshlavacek
    opened on May 9, 2026
    Location:
    • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
    • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
    Original markers:
    _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

    defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
    _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
    Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
    What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
    Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
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var __m = "*";
var __re = new RegExp('^' + ".*" + '
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
      Skip to content
      Make _recompile derived state computed from _changes #74
      Open
      Open
      Make _recompile derived state computed from _changes#74
      Description
      @wshlavacek
      wshlavacek
      opened on May 9, 2026
      Location:
      • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
      • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
      Original markers:
      _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

      defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
      _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
      Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
      What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
      Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
        Skip to content
        Make _recompile derived state computed from _changes #74
        Open
        Open
        Make _recompile derived state computed from _changes#74
        Description
        @wshlavacek
        wshlavacek
        opened on May 9, 2026
        Location:
        • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
        • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
        Original markers:
        _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

        defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
        _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
        Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
        What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
        Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
        Metadata
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
          Skip to content
          Make _recompile derived state computed from _changes #74
          Open
          Open
          Make _recompile derived state computed from _changes#74
          Description
          @wshlavacek
          wshlavacek
          opened on May 9, 2026
          Location:
          • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
          • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
          Original markers:
          _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

          defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
          _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
          Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
          What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
          Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
          Metadata
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, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
            Skip to content
            Make _recompile derived state computed from _changes #74
            Open
            Open
            Make _recompile derived state computed from _changes#74
            Description
            @wshlavacek
            wshlavacek
            opened on May 9, 2026
            Location:
            • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
            • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
            Original markers:
            _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

            defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
            _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
            Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
            What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
            Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
            Metadata
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, 'i');
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})();
Make `_recompile` derived state computed from `_changes` · Issue #74 · RuleWorld/PyBioNetGen · GitHub
              Skip to content
              Make _recompile derived state computed from _changes #74
              Open
              Open
              Make _recompile derived state computed from _changes#74
              Description
              @wshlavacek
              wshlavacek
              opened on May 9, 2026
              Location:
              • bionetgen/modelapi/blocks.py:46 (docstring on _recompile)
              • bionetgen/modelapi/blocks.py:142 (reset_compilation_tags body)
              Original markers:
              _recompile : bool
a tag that tells a potential future simulator if the model
needs to be recompiled. TODO: has to be computed from _changes
property upon get request.

              defreset_compilation_tags(self) ->None:
# TODO: Make these properties such that it checks each# item for changes/recompile tags# for item in self.items:# self.items[item]._recompile = False# self.items[item]._changes = {}
              _recompile is currently an imperative bool flag set to True in add_item and reset by reset_compilation_tags. It can drift out of sync with the actual _changes dict — e.g. if items are mutated through their own _changes machinery without going through the block's add_item path.
              Recent context:8de992a (Deduplicate block __setattr__ via shared helper) routed all 17 subclass setters through _set_item_attribute, which uniformly writes self._changes[name] = value. That makes _changes the canonical source of truth for "this block has been edited," which in turn makes deriving _recompile straightforward.
              What would unblock this: convert _recompile to a @property that returns bool(self._changes) (or any(item._recompile for item in self.items.values()) if per-item tracking is required). Apply the same shape for cascading resets across child items if needed.
              Discovered during: non-Atomizer TODO/FIXME triage sweep, 2026-05-08.
              Metadata
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