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Example Data for CellPin

This repository provides minimal example datasets for the CellPin tutorial.

The data were obtained from the 10x Genomics Xenium preview dataset:

https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast

We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.

The original dataset is described in:

https://www.nature.com/articles/s41467-023-43458-x

Processing summary

The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.

Standard quality control procedures following single cell best practices for scRNA-seq were applied.

Spatial data were subsetted, and a normalized expression layer was added.

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GitHub - Saur-Lab/cellpin-data: Example data for cellpin · GitHub
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
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, 'i');
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GitHub - Saur-Lab/cellpin-data: Example data for cellpin · GitHub
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
About
Example data for cellpin
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, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - Saur-Lab/cellpin-data: Example data for cellpin · GitHub
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
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Example data for cellpin
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, 'i');
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
GitHub - Saur-Lab/cellpin-data: Example data for cellpin · GitHub
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
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Example data for cellpin
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
GitHub - Saur-Lab/cellpin-data: Example data for cellpin · GitHub
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
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Example data for cellpin
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
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var __m = "*";
var __re = new RegExp('^' + ".*" + '
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
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console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
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Example Data for CellPin
This repository provides minimal example datasets for the CellPin tutorial.
The data were obtained from the 10x Genomics Xenium preview dataset:
https://www.10xgenomics.com/products/xenium-in-situ/preview-dataset-human-breast
We used In Situ Sample 1, Replicate 1 (spatial) and the corresponding FRP (scRNA-seq) sample.
The original dataset is described in:
https://www.nature.com/articles/s41467-023-43458-x
Processing summary
The scRNA-seq reference was restricted to Xenium panel genes plus 1,000 highly variable genes.
Standard quality control procedures following single cell best practices for scRNA-seq were applied.
Spatial data were subsetted, and a normalized expression layer was added.
About
Example data for cellpin
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Readme
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