Sex Chromosome Lab

This repository contains data and code for annotating placenta genomics datasets.

Describes methods to use expression of specific genes on the X and Y chromosomes to infer the sex chromosome complement and identifies genes consistently affected by loss of chromosome X (LOX), loss of X chromosome inactivation (XaXa), and loss of chromosome Y

repository for code associated with the SCC-aware alignment tutorial paper (Plaisier et al. 202x)

Investigating the effects of different parameters on variant calling genome-wide (A, X, Y, mtDNA)

Identifying sex chromosome complement in cancer cell line encyclopedia (CCLE) samples

Coordinates for genomic features on human X and Y chromosomes.

Infer sex from DNA sequencing data and RNA sequencing data