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Labels assigned doesn't match with the highest scoring label

Status: Open.

#305In SingleR-inc/SingleR;

· Rohit-Satyam opened on Apr 24, 2026

Figure out what to do with plotScoreHeatmap()

Status: Open.

#303In SingleR-inc/SingleR;

· LTLA opened on Mar 9, 2026

Error: std::bad_alloc

Status: Open.

#299In SingleR-inc/SingleR;

· ConYel opened on Sep 16, 2025

Error in loadNamespace(x) : there is no package called ‘scrapper’

Status: Open.

#298In SingleR-inc/SingleR;

· David-666-Y opened on Jul 21, 2025

Annotate Bulk RNASeq based on a single cell RNASeq reference

Status: Open.

#297In SingleR-inc/SingleR;

· xiw588 opened on May 6, 2025

only some clusters are annotated

Status: Open.

#296In SingleR-inc/SingleR;

· feanaros opened on Mar 21, 2025

annotation_colors option in plotMarkerHeatmap?

Status: Open.

#295In SingleR-inc/SingleR;

· jeremymchacon opened on Mar 18, 2025

How the score for each cell type calculated in singleR using de.method = "wilcox"

Status: Open.

#294In SingleR-inc/SingleR;

· raragreen opened on Mar 1, 2025

cannot use de.method="wilcox" and plotMarkerHeatmap function.

Status: Open.

#291In SingleR-inc/SingleR;

· AmmyDK opened on Dec 31, 2024

Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y' only on ImmGen data.

Status: Open.

#269In SingleR-inc/SingleR;

· ghost opened on May 13, 2024

Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

Status: Open.

#268In SingleR-inc/SingleR;

· ArzooShamoon opened on May 13, 2024

Installation of SingleR in R/4.2.2 using BiocManager v3.16 fails

Status: Open.

#260In SingleR-inc/SingleR;

· star0044 opened on Jan 8, 2024