Stage Release v1.1.0 by BryanRumsey · Pull Request #302 · StochSS/SpatialPy

BryanRumsey · 2022-07-27T13:08:18Z

Changes

[Combinatory Geometry #301] Added a new combinatory geometry class.
[Lattice Module #303] Added a new lattice module to support spherical and cylindrical coordinate systems.
[Transformations Module #304, Reflection Transformation #311, Scaling Transformations #312] Added a new transformation module to allow users to manipulate domain regions.
[Domain Actions #305] Implemented domain actions to allow users to create, preview and apply multiple actions at once.
[Update docs for v1.1 #315] Updated documentation.
[Examples with actions #308] Updated examples.

Bug Fixes

[Fixes #313 - broken stochastic diffusion #314] Fixed particle diffusion.
[HOTFIX: Domain.add_point defaults #300] Fixed default values for Domain.add_point.

closes#289
closes#291
closes#292
closes#293
closes#294
closes#295
closes#296
closes#297
closes#298
closes#299
closes#306
closes#309
closes#310
closes#313

v1.0.2 Release

Release v1.0.3

Staging

Closes#289

…d spherical lattice.

…atialPy into lattice

…een added.

…SpatialPy into examples-with-actions

…atialPy into reflect-transform

into scaling-transform

…into pre_v1.1_staging

…pre_v1.1_staging

…update_docs_v1.1

HOTFIX: `Domain.add_point` defaults

Combinatory Geometry

Lattice Module

Transformations Module

Domain Actions

Examples with actions

Reflection Transformation

Scaling Transformations

Pre v1.1 staging

Review changes

Update docs for v1.1

briandrawertand others added 11 commits April 14, 2022 11:57

Merge pull request#252from StochSS/staging
1ab0a23
v1.0.2 Release

Merge pull request#279from StochSS/staging
df8e3e0
Release v1.0.3

Merge pull request#288from StochSS/staging
a993a1b
Staging

Closes#289
af2585c

Fixed defaults for Domain.add_point.closes#299.
4fb7f1e

Added a class for cominatory geometry.
0007cae

Added numpy.bool_ to geometry.inside return type check.
1052431

Added the new geometry to the import sturcture.
de83919

Updated cylinder demo to use new geometry for middle type.
a2bc83f

Merge pull request#290from StochSS/fix_289
a8a17a6
Closes#289

Updated version to v1.1.0
31615f6

BryanRumsey added this to the 1.1.0 Release milestone Jul 27, 2022

BryanRumsey added 18 commits July 27, 2022 11:46

Added a lattice error class.
e5668f7

Added the lattice module.
19aa6ab

Added a base class for lattices.
abcd36e

Added missing kwargs arg to apply.
0f4a5fe

Added the cartesian lattice.
c7e9b0d

Added checks to apply function to ensure proper args are passed. Adde…
6c45d5f
…d spherical lattice.

Bug fixes.
628eb00

Added the cartesian and spherical lattices to the import structure.
9187fc7

Added 2D support to the cartesian lattice.
40383de

Added validation checks to combinatory geometry.
78086d8

Merge branch 'geometry-combinations' ofhttps://github.com/StochSS/Sp…
bd1fa75
…atialPy into lattice

Added cylindrical lattice.
165f82c

Added the cylindrical lattice to the import structure.
81a1014

Bug fixes.
3db8f5e

Merge branch 'geometry-combinations' ofhttps://github.com/StochSS/Sp…
0ffc721
…atialPy into lattice

Fixed the get bounding box function.
6cf9c8a

Added function to update the domain limits after all particles have b…
19668bc
…een added.

Updated the get bounding box function.
afa0ba2

BryanRumseyand others added 29 commits August 12, 2022 15:21

Merge branch 'actions-and-apply-funcs' ofhttps://github.com/StochSS/…
2f0f0dc
…SpatialPy into examples-with-actions

Merge branch 'examples-with-actions' ofhttps://github.com/StochSS/Sp…
cca380f
…atialPy into reflect-transform

Merge branch 'reflect-transform' ofhttps://github.com/StochSS/SpatialPy
e746070
into scaling-transform

Resolved merge conflicts.
95b0b26

Added calculations for particle volume to lattices.
7267c40

Merge branch 'review-changes' ofhttps://github.com/StochSS/SpatialPy…
dc28507
…into pre_v1.1_staging

bug squashing.
7352634

Merge branch 'review-changes' ofhttps://github.com/StochSS/SpatialPy…
324fbd7
…into pre_v1.1_staging

Added a 3d cylinder example using lattices and actions.
4ce3ad3

Fixed geometries.
502aeb5

converting Cylinder Demo to ode_propensity_functions, correcting bug
9c2c5b8

Merge branch 'pre_v1.1_staging' of github.com:stochss/SpatialPy into …
3309ef8
…pre_v1.1_staging

Merge branch 'pre_v1.1_staging' of github.com:stochss/SpatialPy into …
c6d5573
…update_docs_v1.1

updating docs
e316deb

cast all rounded values to ints.
65e50a8

Fixed issue with get bounding box.
4651f16

Merge pull request#300from StochSS/hotfix-add-point-defaults
a454497
HOTFIX: `Domain.add_point` defaults

Merge pull request#301from StochSS/geometry-combinations
a61b006
Combinatory Geometry

Merge pull request#303from StochSS/lattice
471db1a
Lattice Module

Merge pull request#304from StochSS/transformations
13e06e1
Transformations Module

Merge pull request#305from StochSS/actions-and-apply-funcs
f180410
Domain Actions

Merge pull request#308from StochSS/examples-with-actions
1e95f62
Examples with actions

Merge pull request#311from StochSS/reflect-transform
712c334
Reflection Transformation

Merge pull request#312from StochSS/scaling-transform
900bf1f
Scaling Transformations

Merge pull request#316from StochSS/pre_v1.1_staging
55e6535
Pre v1.1 staging

Merge pull request#317from StochSS/review-changes
641bafa
Review changes

Merge pull request#315from StochSS/update_docs_v1.1
b63e34b
Update docs for v1.1

updated docs
0276e48

Fixed issue with type_id checks.
137af52

briandrawert merged commit 2b77d2f into stagingAug 15, 2022

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Stage Release v1.1.0 - #302

Stage Release v1.1.0#302
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BryanRumsey commented Jul 27, 2022•
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BryanRumsey commented Jul 27, 2022•
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