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1. WikidataIntegrator WikidataIntegratorPublic

   A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint

   Python 261 46

2. DrugMechDB DrugMechDBPublic

   A database of paths that represent the mechanism of action from a drug to a disease in an indication.

   Jupyter Notebook 77 24

3. Applied-Bioinformatics Applied-BioinformaticsPublic

   Student course material for the Applied Bioinformatics course at Scripps Research

   Jupyter Notebook 39 32

4. YPet YPetPublic

   Javascript library to rapidly annotate paragraphs of text on websites with the goal of making the annotation process as fast and simple as possible.

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5. mark2cure mark2curePublic

   Mark2Cure allows anyone that can read English, regardless of background, to help in the process of biomedical discovery.

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6. sparql_to_pandas sparql_to_pandasPublic

   Example for accessing SPARQL endpoints in Python with Pandas

   Jupyter Notebook 13 9