Skip to content
View SwatiBio's full-sized avatar
0 followers · 1 following

Achievements

Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: YOLOAchievement: Quickdraw

Block or report SwatiBio

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
SwatiBio/README.md

Hi there 👋

I'm Swati

whoami
Biotech Postgraduate
Bioinformatics Researcher
Interested in
🧬 Multi-Omics Integration (MOFA2, TCGA)
🔬 SLiM Motif Discovery (MEME Suite)
📊 Survival Analysis & Data Science
🛠 Building Reproducible Bioinformatics Pipelines
📚 Learning Advanced Statistical Genomics

🧰 Tech Stack

Languages

PythonRBash

Bioinformatics & Data

BiopythonPandasNumPyMatplotlibSciPyscikit-learnBioconductorJupyter

Sequence & Motif Analysis

MEME SuiteNCBI BLAST

Tools & Platforms

GitVS CodeRStudio

🚀 Featured Projects

Autism SLiM Discovery

Systematic discovery of conserved short linear motifs in intrinsically disordered regions of autism risk genes (SFARI) vs matched controls. MEME discriminative motif discovery, TOMTOM validation, bootstrap analysis, and interactive HTML report.

PythonBioPythonMEME SuiteIUPred3Fisher's exact test

TCGA-BRCA Multi-Omics MOFA2

Integrating RNA-seq, DNA methylation, and RPPA proteomics from TCGA-BRCA (n=636) using MOFA2. Discovered 15 latent factors linked to breast cancer survival with Cox, RSF, TimeROC, and RMST validation. Interactive Shiny dashboard.

RMOFA2UCSC XenaSurvival AnalysisShiny

📊 GitHub Stats

Swati's GitHub stats

Contributions → Snake food

Snake animation

Pinned Loading

  1. udit-001/waypointudit-001/waypointPublic

    Track every job application, let your AI write the paperwork. Runs locally, no account.

    Go 1

  2. Autism-SLiM-DiscoveryAutism-SLiM-DiscoveryPublic

    Systematic discovery of conserved SLiMs in IDRs of autism risk genes (SFARI) vs matched controls

    HTML

  3. do-abledo-ablePublic

    HTML

  4. TCGA-BRCA-Multi-Omics-ProjectTCGA-BRCA-Multi-Omics-ProjectPublic

    Multi-omics breast cancer analysis covering MOFA2 factor discovery, survival analysis and interactive Shiny dashboard

    R